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The map label for this gene is yfkH [H]

Identifier: 108763366

GI number: 108763366

Start: 5729877

End: 5730956

Strand: Reverse

Name: yfkH [H]

Synonym: MXAN_4588

Alternate gene names: 108763366

Gene position: 5730956-5729877 (Counterclockwise)

Preceding gene: 108760065

Following gene: 108758248

Centisome position: 62.7

GC content: 67.69

Gene sequence:

>1080_bases
ATGGTTCTCCCTGGCAAGGGAATGGGCTGGAAGACGTTCTTTCTGGCGCTGAAGGACGAGTGGACGCGCGACGAGGTGGG
GGACGTCGCTGGCGCGCTCACCTTCCGGATGATTCTGGCGCTGTTCCCATTCCTGCTGTTCCTGGTGTCGCTGGCGGGTC
TCCTCATCGAGCCCGCCCAGGCCCAGGTGCTCATCCAGGAACTGGCGCGGGTGGCGCCCCGGGAAGTGACGTCCATCCTG
AGCGAGCGCATCGAGGCGCTGGCGAACAGCCGGCCGGTGGGGCTGCTGACGGTGGGCGGTGTCGGTGCCGTCTGGGCGGC
CTCCGCGGGCGTGGTGGCGCTGATGACGGCGCTCAACAAGGTCTACGGTGTGACGGAGTCGCGTCCCATCTGGAAGCTGC
GCGGCATCGCGCTGCTGGTGACACTGGGCGGAGCGGCGGTGGCCATCCTCGCGGCGTTCGCGGTCATCGTCACGCCCGTC
ATCGCTGGCAAGCTTCCCGGCGGGTTGGGCACCGTGCTCATGTGGCTGCGGCTCCCGGTAGCGGGCCTGCTGATGATGTT
TCTGTGGGCGGTGCTGTACTACGTGCTGCCGGACGTGAATCAGAAGTTCCGTTTCATCACCCCGGGCTCGGTGGTGGGCG
TGCTCATCTGGGTGTTCGCGTCGTGGGGCTTCTCCCAGTATGTGGCCAACTTCGGCAAGTACGACGTCAACTACGGCGCC
ATCGGCGGTGTCATCGTCATGCTGCTGTGGATGTGGATCTCCGCGCAGGTCATCCTGCTGGGCGCGGAAATCAACGCCAT
CCTCGAGCACCGTTCCCCGGACGGAAAGGCGCCGGGCCAGAAGGTCCCGGAGCAGGGCAAGGCGCTGACCGCCACCAAGA
CGGAACTGGAGGCGGGAGGTGCGTCGCTTCCGGGCGCTCCGGGCTTCCAGCCCGTGGTGGACCCGGTGACGGGCCGGCCC
CTGGATGACCCACCGTCCGCTCCACCCAGGCTGCGTGACACGCCGCTCGCGGCGGCCTTCAAGTGGACCGTGGGCATGGG
CCTGGGGTTGTTCCTGCTGCGCAAGTCGGACTCCCGGTAG

Upstream 100 bases:

>100_bases
TGCCTTCCGGCCGCATGCAGGGAAGCTGGGGGCTGGAGGTCGCCTGGGGTGTGGGGAATGCGCATCGTTCCCCCGGTCGC
AGCACCTCCGAGGAGGCGGA

Downstream 100 bases:

>100_bases
ACCGTCCTTCGCTTCCCAGTGCCGCCGGGGCGTTCGCGCGTGACGACGGGTGGCTTTTGACTCGCGGCGCCACTCCGGTG
TGAAGGGTTGTCATCGCAGG

Product: YihY family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MVLPGKGMGWKTFFLALKDEWTRDEVGDVAGALTFRMILALFPFLLFLVSLAGLLIEPAQAQVLIQELARVAPREVTSIL
SERIEALANSRPVGLLTVGGVGAVWAASAGVVALMTALNKVYGVTESRPIWKLRGIALLVTLGGAAVAILAAFAVIVTPV
IAGKLPGGLGTVLMWLRLPVAGLLMMFLWAVLYYVLPDVNQKFRFITPGSVVGVLIWVFASWGFSQYVANFGKYDVNYGA
IGGVIVMLLWMWISAQVILLGAEINAILEHRSPDGKAPGQKVPEQGKALTATKTELEAGGASLPGAPGFQPVVDPVTGRP
LDDPPSAPPRLRDTPLAAAFKWTVGMGLGLFLLRKSDSR

Sequences:

>Translated_359_residues
MVLPGKGMGWKTFFLALKDEWTRDEVGDVAGALTFRMILALFPFLLFLVSLAGLLIEPAQAQVLIQELARVAPREVTSIL
SERIEALANSRPVGLLTVGGVGAVWAASAGVVALMTALNKVYGVTESRPIWKLRGIALLVTLGGAAVAILAAFAVIVTPV
IAGKLPGGLGTVLMWLRLPVAGLLMMFLWAVLYYVLPDVNQKFRFITPGSVVGVLIWVFASWGFSQYVANFGKYDVNYGA
IGGVIVMLLWMWISAQVILLGAEINAILEHRSPDGKAPGQKVPEQGKALTATKTELEAGGASLPGAPGFQPVVDPVTGRP
LDDPPSAPPRLRDTPLAAAFKWTVGMGLGLFLLRKSDSR
>Mature_359_residues
MVLPGKGMGWKTFFLALKDEWTRDEVGDVAGALTFRMILALFPFLLFLVSLAGLLIEPAQAQVLIQELARVAPREVTSIL
SERIEALANSRPVGLLTVGGVGAVWAASAGVVALMTALNKVYGVTESRPIWKLRGIALLVTLGGAAVAILAAFAVIVTPV
IAGKLPGGLGTVLMWLRLPVAGLLMMFLWAVLYYVLPDVNQKFRFITPGSVVGVLIWVFASWGFSQYVANFGKYDVNYGA
IGGVIVMLLWMWISAQVILLGAEINAILEHRSPDGKAPGQKVPEQGKALTATKTELEAGGASLPGAPGFQPVVDPVTGRP
LDDPPSAPPRLRDTPLAAAFKWTVGMGLGLFLLRKSDSR

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 38237; Mature: 38237

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLPGKGMGWKTFFLALKDEWTRDEVGDVAGALTFRMILALFPFLLFLVSLAGLLIEPAQ
CCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AQVLIQELARVAPREVTSILSERIEALANSRPVGLLTVGGVGAVWAASAGVVALMTALNK
HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
VYGVTESRPIWKLRGIALLVTLGGAAVAILAAFAVIVTPVIAGKLPGGLGTVLMWLRLPV
HHCCCCCCCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AGLLMMFLWAVLYYVLPDVNQKFRFITPGSVVGVLIWVFASWGFSQYVANFGKYDVNYGA
HHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHH
IGGVIVMLLWMWISAQVILLGAEINAILEHRSPDGKAPGQKVPEQGKALTATKTELEAGG
HHHHHHHHHHHHHHHHHEEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCC
ASLPGAPGFQPVVDPVTGRPLDDPPSAPPRLRDTPLAAAFKWTVGMGLGLFLLRKSDSR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCC
>Mature Secondary Structure
MVLPGKGMGWKTFFLALKDEWTRDEVGDVAGALTFRMILALFPFLLFLVSLAGLLIEPAQ
CCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AQVLIQELARVAPREVTSILSERIEALANSRPVGLLTVGGVGAVWAASAGVVALMTALNK
HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
VYGVTESRPIWKLRGIALLVTLGGAAVAILAAFAVIVTPVIAGKLPGGLGTVLMWLRLPV
HHCCCCCCCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AGLLMMFLWAVLYYVLPDVNQKFRFITPGSVVGVLIWVFASWGFSQYVANFGKYDVNYGA
HHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHH
IGGVIVMLLWMWISAQVILLGAEINAILEHRSPDGKAPGQKVPEQGKALTATKTELEAGG
HHHHHHHHHHHHHHHHHEEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCC
ASLPGAPGFQPVVDPVTGRPLDDPPSAPPRLRDTPLAAAFKWTVGMGLGLFLLRKSDSR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]