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The map label for this gene is recF

Identifier: 108763273

GI number: 108763273

Start: 294790

End: 295932

Strand: Direct

Name: recF

Synonym: MXAN_0246

Alternate gene names: 108763273

Gene position: 294790-295932 (Clockwise)

Preceding gene: 108756798

Following gene: 108758566

Centisome position: 3.23

GC content: 71.65

Gene sequence:

>1143_bases
GTGCGCCTCCTCGCGCTTCACGTCCACGACTTCCGGAACCTCCCCCAGGTCCAGCTCACGCCCAGCGCCCACGCCACCAT
CGCGGTGGGGCAGAACGGGCAGGGCAAGACGAACCTGCTGGAGGCCCTCTACTTCCTGGCCACGCTCAAGCCGCTGCGCG
CGGGGCGTCTGTCGGAGCTGGTGCGCTGGGGTTCGCAGGGCGCGCGGGTGACGGGGCGCTTCCTGCTCAAGGGCGCCGAG
CGTGAAATCGCCGTGGAGGTGGGCGGCGGCACGCGGCAGGCCTTCGTGGATGGGAAGAAGGCCTCCAGCCTGGAGGACTA
CTTCGGCGGCGTGTCCGTGGTGGCCTTCACGCCGGATGACCTGGAGGTGGTGAAGGGCGGTCCGGACTCACGACGCGGCT
TCCTGGACCGGGCGGTGTTCAACCGCTTCCCCGCCTTCCTGCGCGAGAGCCGCGAGTACGCGCGGGCCTTGAAGAACCGC
AACCGCCTGCTGCGCGAAGGGCACACCGTGGACGCGGTGTATCTGGAGGCCTACGACGAGACGCTGGCGAAAGCTGGCGC
GCGCATCTATTCGCGGCGGCGCGCGTTGATGGCGGAGCTGGCGCCCAGGGCGCAGGCGACCTTCGCCTCCATTGGCCGCA
CGGTGGACCCAGCCGTGTACAACTACCGCCCCGCGCATCTGGAGGGCGACTTCGCCGCCGCGGACGAAACGGCGCTGGCG
GCCATGCTGCGGGAGAGCCTCTCCGCGCGCCTGCGGCGGGACATGGAGCGGGGCTTCACCTCGGTGGGGCCGCACTCGGA
CGACGTCTCGGTGACGCTGGGGGGCCGCAGCGCGCGGGCCTACGCGAGCCAGGGACAGCAGCGGGCGCTGGTGCTCGGCT
GGAAGATCGCCGAAATCGAAAACCTGGAGGCCGCGATGGGCTTCCTGCCGCTGCTGCTGCTGGACGACGTGTCGAGCGAG
CTGGACCCAGAGCGCAACGCCTACCTCATGGGCTACCTGGCCCAGAGCGGCGCGCAGGTGGTGCTCACCACCACGGACGG
CTCGCTGGTGCGGGGCGCGGCGGCGGACGACACGCTCTGGCTCGACGTGCACGGCGGGCAGGTGGCGGTGCGCGCGGACG
CCGAGCCGCCTCCCGCCAACTGA

Upstream 100 bases:

>100_bases
AGCCAGCCCGGCGAGGGCGCCACCTTCGTGGTGGAGCTGCCGCTCCAGCCCGCGAGATAGGTCCCCCGCCGGGGAGCGGA
GAGGTTATACGGAGGGGGCC

Downstream 100 bases:

>100_bases
AGTCACGGCGTCACGCGCCGACGGTGCCAGGGCCAGTGGACGTGGAAGCGCCGCTCCGCGTGGTGCGGCACGTCGCCCGG
CGCCACGTTCTTGAAGAAGG

Product: DNA replication and repair protein RecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSELVRWGSQGARVTGRFLLKGAE
REIAVEVGGGTRQAFVDGKKASSLEDYFGGVSVVAFTPDDLEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNR
NRLLREGHTVDAVYLEAYDETLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAADETALA
AMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSARAYASQGQQRALVLGWKIAEIENLEAAMGFLPLLLLDDVSSE
LDPERNAYLMGYLAQSGAQVVLTTTDGSLVRGAAADDTLWLDVHGGQVAVRADAEPPPAN

Sequences:

>Translated_380_residues
MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSELVRWGSQGARVTGRFLLKGAE
REIAVEVGGGTRQAFVDGKKASSLEDYFGGVSVVAFTPDDLEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNR
NRLLREGHTVDAVYLEAYDETLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAADETALA
AMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSARAYASQGQQRALVLGWKIAEIENLEAAMGFLPLLLLDDVSSE
LDPERNAYLMGYLAQSGAQVVLTTTDGSLVRGAAADDTLWLDVHGGQVAVRADAEPPPAN
>Mature_380_residues
MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSELVRWGSQGARVTGRFLLKGAE
REIAVEVGGGTRQAFVDGKKASSLEDYFGGVSVVAFTPDDLEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNR
NRLLREGHTVDAVYLEAYDETLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAADETALA
AMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSARAYASQGQQRALVLGWKIAEIENLEAAMGFLPLLLLDDVSSE
LDPERNAYLMGYLAQSGAQVVLTTTDGSLVRGAAADDTLWLDVHGGQVAVRADAEPPPAN

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family

Homologues:

Organism=Escherichia coli, GI1790135, Length=372, Percent_Identity=26.8817204301075, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECF_MYXXD (Q1DFP6)

Other databases:

- EMBL:   CP000113
- RefSeq:   YP_628527.1
- STRING:   Q1DFP6
- GeneID:   4107028
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_0246
- TIGR:   MXAN_0246
- eggNOG:   COG1195
- HOGENOM:   HBG645124
- OMA:   GQQRTLV
- PhylomeDB:   Q1DFP6
- ProtClustDB:   CLSK944756
- BioCyc:   MXAN246197:MXAN_0246-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_00365
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- TIGRFAMs:   TIGR00611

Pfam domain/function: PF02463 SMC_N

EC number: NA

Molecular weight: Translated: 41291; Mature: 41291

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: PS00617 RECF_1; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSEL
CEEEEEEEHHHCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
VRWGSQGARVTGRFLLKGAEREIAVEVGGGTRQAFVDGKKASSLEDYFGGVSVVAFTPDD
HHHCCCCCEEEEHHEEECCCCEEEEEECCCCEEEEECCCCCCCHHHHCCCEEEEEECCCC
LEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNRNRLLREGHTVDAVYLEAYDE
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
TLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAADETALA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCHHHHHH
AMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSARAYASQGQQRALVLGWKIAEIE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEEEEEHHHH
NLEAAMGFLPLLLLDDVSSELDPERNAYLMGYLAQSGAQVVLTTTDGSLVRGAAADDTLW
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCEEECCCCCCEEE
LDVHGGQVAVRADAEPPPAN
EEECCCEEEEEECCCCCCCC
>Mature Secondary Structure
MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSEL
CEEEEEEEHHHCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
VRWGSQGARVTGRFLLKGAEREIAVEVGGGTRQAFVDGKKASSLEDYFGGVSVVAFTPDD
HHHCCCCCEEEEHHEEECCCCEEEEEECCCCEEEEECCCCCCCHHHHCCCEEEEEECCCC
LEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNRNRLLREGHTVDAVYLEAYDE
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
TLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAADETALA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCHHHHHH
AMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSARAYASQGQQRALVLGWKIAEIE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEEEEEHHHH
NLEAAMGFLPLLLLDDVSSELDPERNAYLMGYLAQSGAQVVLTTTDGSLVRGAAADDTLW
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCEEECCCCCCEEE
LDVHGGQVAVRADAEPPPAN
EEECCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA