| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is 108763050
Identifier: 108763050
GI number: 108763050
Start: 7057107
End: 7058558
Strand: Reverse
Name: 108763050
Synonym: MXAN_5693
Alternate gene names: NA
Gene position: 7058558-7057107 (Counterclockwise)
Preceding gene: 108758616
Following gene: 108760023
Centisome position: 77.23
GC content: 69.21
Gene sequence:
>1452_bases TTGGCGCGCCGAACGGCCGACGATGAGGGACGGGGCTCCACCTCGTGCTTCACCTCGTCGGCCCCGAGGACATTCAGGAT GACGCTGCGACCCACCACGACGCGAGCCGTTCCCCCGCGCCCGGCATCGGCCGCTTCGCCCCTCAATGCCGTCACCACGC CGGGAGGAAGCTGGAGACGCTCGACGGCCCGCGAGGTGCCCATCAACGAGCTCCAGGAGAAGTTCGGCTGGAAGGATGAC AGCTGGCAGGTGGGGTTGATGCAGGCCGCTGACGCGGCGGGCAGCAAGACGCGCGGTGGCAACGGGCAGGTGTCCGCGGC GGAGCTGGAGCGCTACCTGGCCGCGCCCGAGGACGGGCAGTACCTGACGTCCACCGCGCTTCAGCAGAAGCGCTCCTCGC TGGACGCGAAGCTCGCGCAGGGAAATGGCTCCGCGGTGGGCGTGGACGCCTTCGAGAGTGGCTGGCAGGCCACGGTGGCC CGGCGCGCGGACCTGCTGGGGGGCAATGGAGACGGCCAGCTCAGCGCGGAGGAACTGGACGCGTTCATCCAGGCGTCGAA GGCGGGCAAGCACGCGGACACCCGCTGGGTGCCGGACCAGCAGATGGCCGCGTTCCAGAGCCGCGTGGCCGAAGCGGCCG GAGAGCTGGACCCGATGCGTCCCGCCGGAGCGCTGGGCTCGGAGGGGCTCAGCCTGGTGAAGGAGTACTCGCGCCTGGCG CTGGACCAGGGGGCGAACGTCCCCACCTTCGTGAGCTACATGCTGTCCGCGTCCGACATCCAGGAGACGCCCGCGACGGT GTCCCGGCTGGAGAGCACCTTCGTTCGCGACCCCGAGCTGGGGCGCACCGGCGTCACCGACTCCGACTACACGCGGACGG GCTTCGACCGGGGCCACATGAAGCCGGCGGAGGACTCGCCCACGCAGGAGGCGATGAACGAGAGCCACCTGATGACCAAC ATCGCCCCCCAGCACGGCAACCACAACCAGCAGGTGTGGCGCACGCTGGAGCAGGGCGTCTCCGGTCTCGTGAACTCGCA GGGCGGCAAGGCGTACATCCTCACCGGCAACCTGTACCTGGATGACAAGGGACAGCCGCTGCCTCCGGAGAAGCGGGAGA CGACGGGGGCGGGGGAGCGCCGCATCGCCGTGCCCACGCACAACTTCAAGACGGTCCTCCACGAGCTGCCGAACGGCAGC CTCACGATGTACGCGTACCTGGTGCCCAACACGAAGGACGGGCCGTCGAAGAAGGAGGACATCCTCCCGCTGCTCGATTC GCACCGCGTACCCGTGGACCGCATCGAGGAACTGCTGGGGCAGGACCTCTACGCAAACCTGCCCAAGCGGGTGCAGGACA AGCTGGAGAAGGGCACGTCGGCCGAAGGCGTCTTCCAGCGCAACAGCCTGTACTTCGCCGCCAGCCTGTTCCGTTTCGCG CCCGGCAACTGA
Upstream 100 bases:
>100_bases CCCTTCGAAAGCCCCAGGAAAGAAGGGTTAGGCGGGTATCCAGGTGCGAAGCGACCCCCAGGTTCTTTTTCTTCGTAAGA AAACGGAGCCGTGACGCAAC
Downstream 100 bases:
>100_bases CGCGGGGCTTCACAGCCTGGGCTTCGCTTCCGGGGGAAGCACGGGCTTACGCCACGGGACGCGGTACCCCCAGGTGTGGG TCATCCACGTGCTCGACGAC
Product: DNA/RNA non-specific endonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 483; Mature: 482
Protein sequence:
>483_residues MARRTADDEGRGSTSCFTSSAPRTFRMTLRPTTTRAVPPRPASAASPLNAVTTPGGSWRRSTAREVPINELQEKFGWKDD SWQVGLMQAADAAGSKTRGGNGQVSAAELERYLAAPEDGQYLTSTALQQKRSSLDAKLAQGNGSAVGVDAFESGWQATVA RRADLLGGNGDGQLSAEELDAFIQASKAGKHADTRWVPDQQMAAFQSRVAEAAGELDPMRPAGALGSEGLSLVKEYSRLA LDQGANVPTFVSYMLSASDIQETPATVSRLESTFVRDPELGRTGVTDSDYTRTGFDRGHMKPAEDSPTQEAMNESHLMTN IAPQHGNHNQQVWRTLEQGVSGLVNSQGGKAYILTGNLYLDDKGQPLPPEKRETTGAGERRIAVPTHNFKTVLHELPNGS LTMYAYLVPNTKDGPSKKEDILPLLDSHRVPVDRIEELLGQDLYANLPKRVQDKLEKGTSAEGVFQRNSLYFAASLFRFA PGN
Sequences:
>Translated_483_residues MARRTADDEGRGSTSCFTSSAPRTFRMTLRPTTTRAVPPRPASAASPLNAVTTPGGSWRRSTAREVPINELQEKFGWKDD SWQVGLMQAADAAGSKTRGGNGQVSAAELERYLAAPEDGQYLTSTALQQKRSSLDAKLAQGNGSAVGVDAFESGWQATVA RRADLLGGNGDGQLSAEELDAFIQASKAGKHADTRWVPDQQMAAFQSRVAEAAGELDPMRPAGALGSEGLSLVKEYSRLA LDQGANVPTFVSYMLSASDIQETPATVSRLESTFVRDPELGRTGVTDSDYTRTGFDRGHMKPAEDSPTQEAMNESHLMTN IAPQHGNHNQQVWRTLEQGVSGLVNSQGGKAYILTGNLYLDDKGQPLPPEKRETTGAGERRIAVPTHNFKTVLHELPNGS LTMYAYLVPNTKDGPSKKEDILPLLDSHRVPVDRIEELLGQDLYANLPKRVQDKLEKGTSAEGVFQRNSLYFAASLFRFA PGN >Mature_482_residues ARRTADDEGRGSTSCFTSSAPRTFRMTLRPTTTRAVPPRPASAASPLNAVTTPGGSWRRSTAREVPINELQEKFGWKDDS WQVGLMQAADAAGSKTRGGNGQVSAAELERYLAAPEDGQYLTSTALQQKRSSLDAKLAQGNGSAVGVDAFESGWQATVAR RADLLGGNGDGQLSAEELDAFIQASKAGKHADTRWVPDQQMAAFQSRVAEAAGELDPMRPAGALGSEGLSLVKEYSRLAL DQGANVPTFVSYMLSASDIQETPATVSRLESTFVRDPELGRTGVTDSDYTRTGFDRGHMKPAEDSPTQEAMNESHLMTNI APQHGNHNQQVWRTLEQGVSGLVNSQGGKAYILTGNLYLDDKGQPLPPEKRETTGAGERRIAVPTHNFKTVLHELPNGSL TMYAYLVPNTKDGPSKKEDILPLLDSHRVPVDRIEELLGQDLYANLPKRVQDKLEKGTSAEGVFQRNSLYFAASLFRFAP GN
Specific function: Unknown
COG id: COG1864
COG function: function code F; DNA/RNA endonuclease G, NUC1
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA/RNA non-specific endonuclease family [H]
Homologues:
Organism=Homo sapiens, GI53759134, Length=166, Percent_Identity=30.7228915662651, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI224451073, Length=249, Percent_Identity=26.5060240963855, Blast_Score=70, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17505967, Length=173, Percent_Identity=32.3699421965318, Blast_Score=77, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322253, Length=186, Percent_Identity=32.258064516129, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI20129899, Length=193, Percent_Identity=33.6787564766839, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI24581065, Length=236, Percent_Identity=32.2033898305085, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018524 - InterPro: IPR001604 - InterPro: IPR020821 [H]
Pfam domain/function: PF01223 Endonuclease_NS [H]
EC number: NA
Molecular weight: Translated: 52249; Mature: 52117
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRTADDEGRGSTSCFTSSAPRTFRMTLRPTTTRAVPPRPASAASPLNAVTTPGGSWRR CCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCHH STAREVPINELQEKFGWKDDSWQVGLMQAADAAGSKTRGGNGQVSAAELERYLAAPEDGQ CCCCCCCHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCCCCCEEHHHHHHHHCCCCCCC YLTSTALQQKRSSLDAKLAQGNGSAVGVDAFESGWQATVARRADLLGGNGDGQLSAEELD HHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHH AFIQASKAGKHADTRWVPDQQMAAFQSRVAEAAGELDPMRPAGALGSEGLSLVKEYSRLA HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH LDQGANVPTFVSYMLSASDIQETPATVSRLESTFVRDPELGRTGVTDSDYTRTGFDRGHM HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC KPAEDSPTQEAMNESHLMTNIAPQHGNHNQQVWRTLEQGVSGLVNSQGGKAYILTGNLYL CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEE DDKGQPLPPEKRETTGAGERRIAVPTHNFKTVLHELPNGSLTMYAYLVPNTKDGPSKKED CCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHH ILPLLDSHRVPVDRIEELLGQDLYANLPKRVQDKLEKGTSAEGVFQRNSLYFAASLFRFA HHHHHHCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHCC PGN CCC >Mature Secondary Structure ARRTADDEGRGSTSCFTSSAPRTFRMTLRPTTTRAVPPRPASAASPLNAVTTPGGSWRR CCCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCHH STAREVPINELQEKFGWKDDSWQVGLMQAADAAGSKTRGGNGQVSAAELERYLAAPEDGQ CCCCCCCHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCCCCCEEHHHHHHHHCCCCCCC YLTSTALQQKRSSLDAKLAQGNGSAVGVDAFESGWQATVARRADLLGGNGDGQLSAEELD HHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHH AFIQASKAGKHADTRWVPDQQMAAFQSRVAEAAGELDPMRPAGALGSEGLSLVKEYSRLA HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH LDQGANVPTFVSYMLSASDIQETPATVSRLESTFVRDPELGRTGVTDSDYTRTGFDRGHM HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC KPAEDSPTQEAMNESHLMTNIAPQHGNHNQQVWRTLEQGVSGLVNSQGGKAYILTGNLYL CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEE DDKGQPLPPEKRETTGAGERRIAVPTHNFKTVLHELPNGSLTMYAYLVPNTKDGPSKKED CCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHH ILPLLDSHRVPVDRIEELLGQDLYANLPKRVQDKLEKGTSAEGVFQRNSLYFAASLFRFA HHHHHHCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHCC PGN CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9403685 [H]