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The map label for this gene is sdhC [H]

Identifier: 108762843

GI number: 108762843

Start: 1248383

End: 1249063

Strand: Reverse

Name: sdhC [H]

Synonym: MXAN_1072

Alternate gene names: 108762843

Gene position: 1249063-1248383 (Counterclockwise)

Preceding gene: 108758173

Following gene: 108758097

Centisome position: 13.67

GC content: 66.23

Gene sequence:

>681_bases
ATGAGCACCCAAGCCGCTGCCGCAGTAGAGACGAAGACACCGCTCCTCAAGTCCCGCCTGGGCTCGTTCCTCGCGGTGGT
TCCCCTGTCCATCTGGGTCATCAACCACCTGTGGGACAACCTCTCCGCCTTCAACGGCGCGGACGCCTGGCAGAAGTCGG
TGACGACGTACGCCAACCCGTTCTCCCAGGTCTTCACCTTCCTCATCGTCCTGCTGCCGCTGCTGATGCACACCGGCTGG
GGCTTGGTGCGCCTGTTCAGCTTCCGGCCGAACAACGCCCGCTACAACAACTACGGCAACCTCAAGTACATCCTCCAGCG
CATCACCGCGGTGGGCGTGCTGGCCTTCCTGGGCGCCCACATCTGGCTGGCCTTCCTCTACCCGCGGCTGGTGCTGGGTC
ACCCGGAGGCGTTCGACGACATCGCCCGGGAGATGCACCACCACGCGCCCACCCTGGTCGTCTACCTGCTGGGCACCCTG
GGCACCTCGTACCACCTGGCCAACGGCCTCCAGGGCTTCGCCATGGGCTGGGGTCTGCTCTCCAGCGAGCGCTCCATGCG
CAAGTTCGAGCCGGTGGTCATCATCCTCTTCCTGGTCCTGACGGCGATGAGCTGGGCGGTCATCTACGCGCTCTACACCG
CGGGCGCCGCCTTCAGCCCCGTGGGTGCCACCCCTCCGTGA

Upstream 100 bases:

>100_bases
CCAGCCCCGGCGCTGGAACGGCTATAAACCGCCGTCCGACTGTCACTTGCCTTCGACCGTGGACGCGGCAAGACGCCCAC
GCGCCGCCGCTGGAGATTCG

Downstream 100 bases:

>100_bases
CGCGGCCCGGGCCCGGCGCTCCCGGGCCTGGAAGTCCAGGCGCACGAAGCACACCGGCCGCCCCCGAGACTTCCGGGGAG
CGGCCGGTTTCATTTCCAGG

Product: succinate dehydrogenase cytochrome b558 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-558 [H]

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSTQAAAAVETKTPLLKSRLGSFLAVVPLSIWVINHLWDNLSAFNGADAWQKSVTTYANPFSQVFTFLIVLLPLLMHTGW
GLVRLFSFRPNNARYNNYGNLKYILQRITAVGVLAFLGAHIWLAFLYPRLVLGHPEAFDDIAREMHHHAPTLVVYLLGTL
GTSYHLANGLQGFAMGWGLLSSERSMRKFEPVVIILFLVLTAMSWAVIYALYTAGAAFSPVGATPP

Sequences:

>Translated_226_residues
MSTQAAAAVETKTPLLKSRLGSFLAVVPLSIWVINHLWDNLSAFNGADAWQKSVTTYANPFSQVFTFLIVLLPLLMHTGW
GLVRLFSFRPNNARYNNYGNLKYILQRITAVGVLAFLGAHIWLAFLYPRLVLGHPEAFDDIAREMHHHAPTLVVYLLGTL
GTSYHLANGLQGFAMGWGLLSSERSMRKFEPVVIILFLVLTAMSWAVIYALYTAGAAFSPVGATPP
>Mature_225_residues
STQAAAAVETKTPLLKSRLGSFLAVVPLSIWVINHLWDNLSAFNGADAWQKSVTTYANPFSQVFTFLIVLLPLLMHTGWG
LVRLFSFRPNNARYNNYGNLKYILQRITAVGVLAFLGAHIWLAFLYPRLVLGHPEAFDDIAREMHHHAPTLVVYLLGTLG
TSYHLANGLQGFAMGWGLLSSERSMRKFEPVVIILFLVLTAMSWAVIYALYTAGAAFSPVGATPP

Specific function: Di-heme cytochrome of the succinate dehydrogenase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b558 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011138
- InterPro:   IPR016002
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 24994; Mature: 24862

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQAAAAVETKTPLLKSRLGSFLAVVPLSIWVINHLWDNLSAFNGADAWQKSVTTYANP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCH
FSQVFTFLIVLLPLLMHTGWGLVRLFSFRPNNARYNNYGNLKYILQRITAVGVLAFLGAH
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IWLAFLYPRLVLGHPEAFDDIAREMHHHAPTLVVYLLGTLGTSYHLANGLQGFAMGWGLL
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHH
SSERSMRKFEPVVIILFLVLTAMSWAVIYALYTAGAAFSPVGATPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
STQAAAAVETKTPLLKSRLGSFLAVVPLSIWVINHLWDNLSAFNGADAWQKSVTTYANP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCH
FSQVFTFLIVLLPLLMHTGWGLVRLFSFRPNNARYNNYGNLKYILQRITAVGVLAFLGAH
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IWLAFLYPRLVLGHPEAFDDIAREMHHHAPTLVVYLLGTLGTSYHLANGLQGFAMGWGLL
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHH
SSERSMRKFEPVVIILFLVLTAMSWAVIYALYTAGAAFSPVGATPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3086287; 8969504; 9384377; 3027051; 3036777; 2120540 [H]