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The map label for this gene is ntrC [H]

Identifier: 108762746

GI number: 108762746

Start: 7042466

End: 7044469

Strand: Reverse

Name: ntrC [H]

Synonym: MXAN_5680

Alternate gene names: 108762746

Gene position: 7044469-7042466 (Counterclockwise)

Preceding gene: 108757760

Following gene: 108759080

Centisome position: 77.07

GC content: 69.81

Gene sequence:

>2004_bases
ATGGGACGCAGGCGCGTCCTGCTGGAACGCAAAACAGGCCCCTCGTGGTGGCCGCGTTCACCCATCCCCCTGGAATCACA
CGAATGTCGCGTCTGGCACGGGACGCGCATGTCGTTTTGCCGTGGCGCTTCGGGAAACCGGGCTGCCCCGCAGTATCGGA
GTTTCGGGAACGCGGAAGGAGGGGCCGCTCCTTCCGCGTTCTTCATCTCCGCTACACTCCGTCCCCCTGATGTGGTTCCT
GACAGAGCCTGTCGGAGGGCATTGGACGGAGGCGAGTGGATGCAAGACGAGATGGCGCAACTCCTCACGGATTTGCGGGG
AGCCAAGGACTTCGAGGCCGCGGCTGCCGCAACGCTCCGGCGGCTGCAGGCCGTCGCCCAGGAGGCCGTTGCGTCCAGTC
GGTACGCAGCCCGGGGCCGGGTGTTGCGAGGCATCGTCCACCTCCGCCCCGGCGAGGCCTACCGCAGTCTGGCCGCACTG
GAGGTAGGGGCTGCGGAGATTACGGATGCCAGTGTAGGCACGCCCTTCTTCACCTCCGCCACGGCCTGGCGCGCGGTGGT
GGAGCACCGGTGCGCGGTCTCCATCGACGTGAATGTCGGGACGGTGCAGCCCCATGCGCCCAACGCCCCCGTGACGGGAG
ACCCGAGCCTGGCGGGCTTCAACAGCCATGAGAGCCGGCAGCGCTTCCTGGGCCGTCATGCGACACACGTCTGCGTGCTT
CCGCTGCGCACGCCGGGTGGGGACATCGAGGGCATGATTTCGCTGGAGGCGGACTGCCTGGCCGCGATGGGGCAGGACTT
CGTCTGGCTGGAGGCAGGGGACCGGCTCCAACTGCTGGCGGACGTGGCGGCGCCGTACCTGGCCCGGCTGCCGCAGCGGC
CCGTGGCCCGGCCGGAGGTGGATGAGTTCCTCCCGGTGGTGGGGCGCTCCATGGCGGAGCTGCTGCCCATCCTCCGCGTC
TTCGCGCTGCAGGATGAGACCATCCTCATCAGCGGCGCCACCGGCGCGGGCAAGTCACGGCTGGCGCGCTGGTGCCACGA
GCGCTCCAACCGCCGCGGCAAGCCCTTCGAGACACTGGACCTGGTGACGGTGCCGGAAGACCTCCAGATGGCGGAGCTCT
TCGGCTGGAAGAAGGGCGCCTTCACCGGCGCGGTGCGAGATGCCCCCGGCAGCGTGGCCCGCGCGGAGGGCGGCACGCTG
TTCATCGACGAAATCGACAAGCTGTCGCTCAAGGCCCAGGCGGGGTTGCTGCACTTGCTGGAGTCGCGCAGCTACCGGCC
GCTCGGTGAGGGCACCGGTGAGCGGCAGGCGGACGTGCGCTTCATCATCGGCACCAACGCGGACCTGCACGCGGAGGTCC
GCGCGGGCCGCTTCCGCGAGGACCTCTACTACCGCGTCAACGTGCTGCCGGTGCGCATGCCGGCCCTTCAGGAGCGCCAG
GACGAAATCCCCCTGTGGGCGCAGTACATGGTGAACCGCCGGCACCGCGAGCGCTCGCCGGACGGCCACGCCCGGTTGAT
GAAGGAGGCGGAGCGGCTGCTGGTGGGGAGCCCCTGGCCGGGCAACCTGCGGCAGCTCGACAACATCGTCCGCCGCGCCT
ACACGCTGGCCATGGTGGAGCACGCGGACGCCTCGGGCGAGCTGGTGCTGCACGAGAAGCATGTCGCGCGGGCGCTCGAC
TATGAGCAGGCCCCGGGAGCCCGGCCGCTGCCGGAGGCGCTGCGCGCGGCCGCGCAGGCCTTCGTCGCCGAAGCACGCCG
CCGCAATGCCCCGTTGGATTTGGACCTGGCCGATGCCTTCCGCGGCATGGTGCTGGGGCTCGCCATCCGCCAGGTGGGGC
GGGACGAGGGCTTCAAGCTGCTGGGCCGCGAGAGCCTGGTGAAGAACCGCAACCACCACAAGGCGCTCAAGCGCGAGTTG
GAGAAGGTGGACTCGCTCTACAAGGCACTGGGCGAGGAGGGCTCGCCCTTCTCCGACTTGCTGTCGGAGGTCGAAGCCGT
CTGA

Upstream 100 bases:

>100_bases
GGGCCTCGACGCCCCAGAAATCGCGCAAGATTTCACGATGAGGACGTTTTAGGAGGGTTGAAGAGGCACTCCTGGTGAAT
TCTGAGCGGCCTGCGTTCTG

Downstream 100 bases:

>100_bases
CTCGCGGCGCCCGGGAAGCTACCGGGCGTCGGCGTGGGGGCCCGCGGCGATGCCCGTGGCGCCCCGGGCCAGCTCGTCAC
ACACGAGCGCGTGGAGCCGG

Product: putative sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 667; Mature: 666

Protein sequence:

>667_residues
MGRRRVLLERKTGPSWWPRSPIPLESHECRVWHGTRMSFCRGASGNRAAPQYRSFGNAEGGAAPSAFFISATLRPPDVVP
DRACRRALDGGEWMQDEMAQLLTDLRGAKDFEAAAAATLRRLQAVAQEAVASSRYAARGRVLRGIVHLRPGEAYRSLAAL
EVGAAEITDASVGTPFFTSATAWRAVVEHRCAVSIDVNVGTVQPHAPNAPVTGDPSLAGFNSHESRQRFLGRHATHVCVL
PLRTPGGDIEGMISLEADCLAAMGQDFVWLEAGDRLQLLADVAAPYLARLPQRPVARPEVDEFLPVVGRSMAELLPILRV
FALQDETILISGATGAGKSRLARWCHERSNRRGKPFETLDLVTVPEDLQMAELFGWKKGAFTGAVRDAPGSVARAEGGTL
FIDEIDKLSLKAQAGLLHLLESRSYRPLGEGTGERQADVRFIIGTNADLHAEVRAGRFREDLYYRVNVLPVRMPALQERQ
DEIPLWAQYMVNRRHRERSPDGHARLMKEAERLLVGSPWPGNLRQLDNIVRRAYTLAMVEHADASGELVLHEKHVARALD
YEQAPGARPLPEALRAAAQAFVAEARRRNAPLDLDLADAFRGMVLGLAIRQVGRDEGFKLLGRESLVKNRNHHKALKREL
EKVDSLYKALGEEGSPFSDLLSEVEAV

Sequences:

>Translated_667_residues
MGRRRVLLERKTGPSWWPRSPIPLESHECRVWHGTRMSFCRGASGNRAAPQYRSFGNAEGGAAPSAFFISATLRPPDVVP
DRACRRALDGGEWMQDEMAQLLTDLRGAKDFEAAAAATLRRLQAVAQEAVASSRYAARGRVLRGIVHLRPGEAYRSLAAL
EVGAAEITDASVGTPFFTSATAWRAVVEHRCAVSIDVNVGTVQPHAPNAPVTGDPSLAGFNSHESRQRFLGRHATHVCVL
PLRTPGGDIEGMISLEADCLAAMGQDFVWLEAGDRLQLLADVAAPYLARLPQRPVARPEVDEFLPVVGRSMAELLPILRV
FALQDETILISGATGAGKSRLARWCHERSNRRGKPFETLDLVTVPEDLQMAELFGWKKGAFTGAVRDAPGSVARAEGGTL
FIDEIDKLSLKAQAGLLHLLESRSYRPLGEGTGERQADVRFIIGTNADLHAEVRAGRFREDLYYRVNVLPVRMPALQERQ
DEIPLWAQYMVNRRHRERSPDGHARLMKEAERLLVGSPWPGNLRQLDNIVRRAYTLAMVEHADASGELVLHEKHVARALD
YEQAPGARPLPEALRAAAQAFVAEARRRNAPLDLDLADAFRGMVLGLAIRQVGRDEGFKLLGRESLVKNRNHHKALKREL
EKVDSLYKALGEEGSPFSDLLSEVEAV
>Mature_666_residues
GRRRVLLERKTGPSWWPRSPIPLESHECRVWHGTRMSFCRGASGNRAAPQYRSFGNAEGGAAPSAFFISATLRPPDVVPD
RACRRALDGGEWMQDEMAQLLTDLRGAKDFEAAAAATLRRLQAVAQEAVASSRYAARGRVLRGIVHLRPGEAYRSLAALE
VGAAEITDASVGTPFFTSATAWRAVVEHRCAVSIDVNVGTVQPHAPNAPVTGDPSLAGFNSHESRQRFLGRHATHVCVLP
LRTPGGDIEGMISLEADCLAAMGQDFVWLEAGDRLQLLADVAAPYLARLPQRPVARPEVDEFLPVVGRSMAELLPILRVF
ALQDETILISGATGAGKSRLARWCHERSNRRGKPFETLDLVTVPEDLQMAELFGWKKGAFTGAVRDAPGSVARAEGGTLF
IDEIDKLSLKAQAGLLHLLESRSYRPLGEGTGERQADVRFIIGTNADLHAEVRAGRFREDLYYRVNVLPVRMPALQERQD
EIPLWAQYMVNRRHRERSPDGHARLMKEAERLLVGSPWPGNLRQLDNIVRRAYTLAMVEHADASGELVLHEKHVARALDY
EQAPGARPLPEALRAAAQAFVAEARRRNAPLDLDLADAFRGMVLGLAIRQVGRDEGFKLLGRESLVKNRNHHKALKRELE
KVDSLYKALGEEGSPFSDLLSEVEAV

Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082117, Length=232, Percent_Identity=41.3793103448276, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI1788905, Length=328, Percent_Identity=36.5853658536585, Blast_Score=168, Evalue=1e-42,
Organism=Escherichia coli, GI1790437, Length=238, Percent_Identity=41.5966386554622, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI87082152, Length=282, Percent_Identity=38.6524822695035, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1788550, Length=273, Percent_Identity=36.2637362637363, Blast_Score=159, Evalue=6e-40,
Organism=Escherichia coli, GI1789233, Length=242, Percent_Identity=37.603305785124, Blast_Score=159, Evalue=7e-40,
Organism=Escherichia coli, GI1789087, Length=325, Percent_Identity=33.5384615384615, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI1790299, Length=285, Percent_Identity=35.4385964912281, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI87081872, Length=224, Percent_Identity=37.9464285714286, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1787583, Length=248, Percent_Identity=36.2903225806452, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1786524, Length=249, Percent_Identity=33.3333333333333, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1789828, Length=221, Percent_Identity=39.8190045248869, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI87081858, Length=220, Percent_Identity=29.0909090909091, Blast_Score=77, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR010114
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 73486; Mature: 73354

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRRRVLLERKTGPSWWPRSPIPLESHECRVWHGTRMSFCRGASGNRAAPQYRSFGNAEG
CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCHHHHCCCCCC
GAAPSAFFISATLRPPDVVPDRACRRALDGGEWMQDEMAQLLTDLRGAKDFEAAAAATLR
CCCCCEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RLQAVAQEAVASSRYAARGRVLRGIVHLRPGEAYRSLAALEVGAAEITDASVGTPFFTSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCCCCCCCHHHH
TAWRAVVEHRCAVSIDVNVGTVQPHAPNAPVTGDPSLAGFNSHESRQRFLGRHATHVCVL
HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE
PLRTPGGDIEGMISLEADCLAAMGQDFVWLEAGDRLQLLADVAAPYLARLPQRPVARPEV
EECCCCCCCCEEEEECHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCH
DEFLPVVGRSMAELLPILRVFALQDETILISGATGAGKSRLARWCHERSNRRGKPFETLD
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEE
LVTVPEDLQMAELFGWKKGAFTGAVRDAPGSVARAEGGTLFIDEIDKLSLKAQAGLLHLL
EEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCEEEEECHHHHHHHHHHHHHHHH
ESRSYRPLGEGTGERQADVRFIIGTNADLHAEVRAGRFREDLYYRVNVLPVRMPALQERQ
HCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEEEEEEECCCHHHHHC
DEIPLWAQYMVNRRHRERSPDGHARLMKEAERLLVGSPWPGNLRQLDNIVRRAYTLAMVE
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHH
HADASGELVLHEKHVARALDYEQAPGARPLPEALRAAAQAFVAEARRRNAPLDLDLADAF
HCCCCCCEEEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
RGMVLGLAIRQVGRDEGFKLLGRESLVKNRNHHKALKRELEKVDSLYKALGEEGSPFSDL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LSEVEAV
HHHHHCC
>Mature Secondary Structure 
GRRRVLLERKTGPSWWPRSPIPLESHECRVWHGTRMSFCRGASGNRAAPQYRSFGNAEG
CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCHHHHCCCCCC
GAAPSAFFISATLRPPDVVPDRACRRALDGGEWMQDEMAQLLTDLRGAKDFEAAAAATLR
CCCCCEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RLQAVAQEAVASSRYAARGRVLRGIVHLRPGEAYRSLAALEVGAAEITDASVGTPFFTSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCCCCCCCHHHH
TAWRAVVEHRCAVSIDVNVGTVQPHAPNAPVTGDPSLAGFNSHESRQRFLGRHATHVCVL
HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE
PLRTPGGDIEGMISLEADCLAAMGQDFVWLEAGDRLQLLADVAAPYLARLPQRPVARPEV
EECCCCCCCCEEEEECHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCH
DEFLPVVGRSMAELLPILRVFALQDETILISGATGAGKSRLARWCHERSNRRGKPFETLD
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEE
LVTVPEDLQMAELFGWKKGAFTGAVRDAPGSVARAEGGTLFIDEIDKLSLKAQAGLLHLL
EEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCEEEEECHHHHHHHHHHHHHHHH
ESRSYRPLGEGTGERQADVRFIIGTNADLHAEVRAGRFREDLYYRVNVLPVRMPALQERQ
HCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEEEEEEECCCHHHHHC
DEIPLWAQYMVNRRHRERSPDGHARLMKEAERLLVGSPWPGNLRQLDNIVRRAYTLAMVE
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHH
HADASGELVLHEKHVARALDYEQAPGARPLPEALRAAAQAFVAEARRRNAPLDLDLADAF
HCCCCCCEEEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
RGMVLGLAIRQVGRDEGFKLLGRESLVKNRNHHKALKRELEKVDSLYKALGEEGSPFSDL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LSEVEAV
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2881918; 11481430; 8478331 [H]