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The map label for this gene is rlmI [H]

Identifier: 108762606

GI number: 108762606

Start: 6916389

End: 6917540

Strand: Direct

Name: rlmI [H]

Synonym: MXAN_5568

Alternate gene names: 108762606

Gene position: 6916389-6917540 (Clockwise)

Preceding gene: 108759865

Following gene: 108757192

Centisome position: 75.67

GC content: 69.36

Gene sequence:

>1152_bases
GTGTCGCTGCTGCGCCGCGGCGTGGAGCGCTGGCAGGGCGGCCACCCGTGGATCTACCGCGCGGACCTGAATGGCGACCC
CGGGCTGCCCGGCGGCGAGGTGGTGCGCGTGACGGACACCCGGGGATGGTTCCTGGGCAAGGCCTTCTATTCGAAGCACT
CGAAGATTTCCCTGCGCTGGCTCTCCTTCGACGACGTCGCGGTGGACGCGGACTTCTTCCGGGAGCGGCTCCTGGCCGCG
GACCGGCTGCGCCAGTTGGCGCTCCCGGGGGAGAAGACGTACCGCCTGGTGCATGGCGAGGCGGACGGGTTGCCCGGGCT
CGTGGTGGACCGCTACGGCGACTTCCTCAGCGTGCAGTTCCTGGTCCCCGCCATGGAGCAGCGCAAGGCGCTCATCGCCG
ACCTGCTCCAGGCGCAGTTCAACCCGCGCGGCATCATCAACCGCTCCGACGTGGGCGTGCGCAACCTGGAGGGCCTCACC
CCGGAGAAGGGCGTGCTGCGCGGCGAACATCCCGGCCCGGTGGCCTTCGACGAGGGCCTGGTGAAGATGCGCGCGGACCT
GCTGGAGGGCCAGAAGACGGGCGCCTTCCTGGACCAGCGCGAGAATCACGTCATGGCCGCGCACTATGCCCACGGCGAGG
CGCTGGACTGCTTCTCCTACGTCGGCGGCTTCGCGCTCCAGCTCGCCACGCGGGCCAGGCACGTCACGGCGATTGAAATC
TCCGAAGCGGCCTCGGCGCAGCTTCGGGAGAACGCCGCGGCCAACAAGCTGAACAACCTGGACGTGGTGGTGGCCAACGC
CTTCGACTTCCTCCGCGACGCGGTGGACGAGGGCAAACGCTTCGACACCATCGTCCTGGACCCGCCGTCCTTCGCGAAGA
ACAAGGACGCCATCCCAGCCGCGGTGCGCGGGTACAAGGAAATCAACCTCCGCGCCCTGCAGCTGTTGCGGCCCGGCGGC
ATCCTCATCACCGCCAGTTGCACGTACCACGTGGACGAACAGGCCTTCGAGGACATGCTCGCCTCCGCCGCCGCGGATGC
CCGCCGCCGCGTGCAAATCATCGAGCGCCGCGGCGCCGGCCGGGACCACCCCGTGCTGCTCAACCTGCGTGAGACGCGCT
ACCTGAAGTGCTTCGTGCTCCGGGTGCTCTGA

Upstream 100 bases:

>100_bases
CTCCTCTCAGCAGCAGGGCCGGGGCCGTCCCCACACCCGCCCCGAGAAGCCCGCCCCGGACCGCACCTCGCCCGAGCTGG
GCCCGGACGGCCTTCCCCAG

Downstream 100 bases:

>100_bases
GGACTCGCCCATGCGGACGCGGGACTGGGACGACGAGGCGGACGACGCGCCCCTGGGTGGCACCCGCGAGAGGGAGCGCG
CGCTGAAGGAAGTGCGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: 23S rRNA m5C1962 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase RlmI [H]

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MSLLRRGVERWQGGHPWIYRADLNGDPGLPGGEVVRVTDTRGWFLGKAFYSKHSKISLRWLSFDDVAVDADFFRERLLAA
DRLRQLALPGEKTYRLVHGEADGLPGLVVDRYGDFLSVQFLVPAMEQRKALIADLLQAQFNPRGIINRSDVGVRNLEGLT
PEKGVLRGEHPGPVAFDEGLVKMRADLLEGQKTGAFLDQRENHVMAAHYAHGEALDCFSYVGGFALQLATRARHVTAIEI
SEAASAQLRENAAANKLNNLDVVVANAFDFLRDAVDEGKRFDTIVLDPPSFAKNKDAIPAAVRGYKEINLRALQLLRPGG
ILITASCTYHVDEQAFEDMLASAAADARRRVQIIERRGAGRDHPVLLNLRETRYLKCFVLRVL

Sequences:

>Translated_383_residues
MSLLRRGVERWQGGHPWIYRADLNGDPGLPGGEVVRVTDTRGWFLGKAFYSKHSKISLRWLSFDDVAVDADFFRERLLAA
DRLRQLALPGEKTYRLVHGEADGLPGLVVDRYGDFLSVQFLVPAMEQRKALIADLLQAQFNPRGIINRSDVGVRNLEGLT
PEKGVLRGEHPGPVAFDEGLVKMRADLLEGQKTGAFLDQRENHVMAAHYAHGEALDCFSYVGGFALQLATRARHVTAIEI
SEAASAQLRENAAANKLNNLDVVVANAFDFLRDAVDEGKRFDTIVLDPPSFAKNKDAIPAAVRGYKEINLRALQLLRPGG
ILITASCTYHVDEQAFEDMLASAAADARRRVQIIERRGAGRDHPVLLNLRETRYLKCFVLRVL
>Mature_382_residues
SLLRRGVERWQGGHPWIYRADLNGDPGLPGGEVVRVTDTRGWFLGKAFYSKHSKISLRWLSFDDVAVDADFFRERLLAAD
RLRQLALPGEKTYRLVHGEADGLPGLVVDRYGDFLSVQFLVPAMEQRKALIADLLQAQFNPRGIINRSDVGVRNLEGLTP
EKGVLRGEHPGPVAFDEGLVKMRADLLEGQKTGAFLDQRENHVMAAHYAHGEALDCFSYVGGFALQLATRARHVTAIEIS
EAASAQLRENAAANKLNNLDVVVANAFDFLRDAVDEGKRFDTIVLDPPSFAKNKDAIPAAVRGYKEINLRALQLLRPGGI
LITASCTYHVDEQAFEDMLASAAADARRRVQIIERRGAGRDHPVLLNLRETRYLKCFVLRVL

Specific function: Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA [H]

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Escherichia coli, GI145693111, Length=393, Percent_Identity=38.4223918575064, Blast_Score=249, Evalue=3e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614 [H]

Pfam domain/function: PF10672 Methyltrans_SAM [H]

EC number: =2.1.1.191 [H]

Molecular weight: Translated: 42605; Mature: 42474

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLRRGVERWQGGHPWIYRADLNGDPGLPGGEVVRVTDTRGWFLGKAFYSKHSKISLRW
CHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEHHHHHCCCCEEEEEE
LSFDDVAVDADFFRERLLAADRLRQLALPGEKTYRLVHGEADGLPGLVVDRYGDFLSVQF
EECCCEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEHHCCCCEEEEEE
LVPAMEQRKALIADLLQAQFNPRGIINRSDVGVRNLEGLTPEKGVLRGEHPGPVAFDEGL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
VKMRADLLEGQKTGAFLDQRENHVMAAHYAHGEALDCFSYVGGFALQLATRARHVTAIEI
HHHHHHHHCCCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEEEE
SEAASAQLRENAAANKLNNLDVVVANAFDFLRDAVDEGKRFDTIVLDPPSFAKNKDAIPA
CHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHH
AVRGYKEINLRALQLLRPGGILITASCTYHVDEQAFEDMLASAAADARRRVQIIERRGAG
HHCCHHHHCHHEEEEECCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RDHPVLLNLRETRYLKCFVLRVL
CCCCEEEEECCHHHEEHEEEECC
>Mature Secondary Structure 
SLLRRGVERWQGGHPWIYRADLNGDPGLPGGEVVRVTDTRGWFLGKAFYSKHSKISLRW
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEHHHHHCCCCEEEEEE
LSFDDVAVDADFFRERLLAADRLRQLALPGEKTYRLVHGEADGLPGLVVDRYGDFLSVQF
EECCCEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEHHCCCCEEEEEE
LVPAMEQRKALIADLLQAQFNPRGIINRSDVGVRNLEGLTPEKGVLRGEHPGPVAFDEGL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
VKMRADLLEGQKTGAFLDQRENHVMAAHYAHGEALDCFSYVGGFALQLATRARHVTAIEI
HHHHHHHHCCCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEEEE
SEAASAQLRENAAANKLNNLDVVVANAFDFLRDAVDEGKRFDTIVLDPPSFAKNKDAIPA
CHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHH
AVRGYKEINLRALQLLRPGGILITASCTYHVDEQAFEDMLASAAADARRRVQIIERRGAG
HHCCHHHHCHHEEEEECCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RDHPVLLNLRETRYLKCFVLRVL
CCCCEEEEECCHHHEEHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA