Definition Myxococcus xanthus DK 1622 chromosome, complete genome.
Accession NC_008095
Length 9,139,763

Click here to switch to the map view.

The map label for this gene is 108762393

Identifier: 108762393

GI number: 108762393

Start: 624930

End: 626510

Strand: Direct

Name: 108762393

Synonym: MXAN_0543

Alternate gene names: NA

Gene position: 624930-626510 (Clockwise)

Preceding gene: 108761859

Following gene: 108758891

Centisome position: 6.84

GC content: 70.02

Gene sequence:

>1581_bases
TTGGCGCCCGCCCCGGTACTCCCAGGAGTGCCGGGGTGGGGCGTTTTCAGCGCATCCGATGGGGGCCATCAACGCCATCC
GGCCTCCTGGTGGATTCCCGCTGTCGACAGGGGCCCCTCTCCCGTGTTCTGGATTCGGCCCGATATGGCCATGAACGTCC
AGACCGCCACCGACTCGTCCGACCGCATCTGGGAGCAGGAAATCCTCCCCGCGCTCGAGCGCTACATTCGTATCCCCAAC
AAGTCGCCCGCCTTCGACCCGGACTGGGTCCGCTCCGGCCACATGGAGGCCGCCGTCCAGCTCGTCGCGGACTGGTGCCT
CGCGCAGGCCCAGCACCTGCCCGGCCTGGTGCTGGAGGTGGTGCGCCTCAAGGACGAGAAGGGCCGCGAGCGCACGCCGG
TCATCTACATGGAGGTGCCCGGGACGAAGGGCGACGACACCATCCTCTTGTACGGCCACCTGGACAAGCAGCCGGAGATG
ACGGGTTGGCGCGAGGGCCTGACGCCGTGGACGCCGGTGCGCGAGGGCGACAAGCTCTACGGGCGCGGCGGCGCGGATGA
CGGCTACTCCGCCTTCGCGTCGCTCACCGCCATCCGCCTGCTGCGCGAGCAGGGCCTGCCGCACGCGCGCTGCGTGGTGC
TCATCGAGGCGTGCGAGGAGAGCGGCAGCTACGACTTGCCGGCCTACATCGAGGCGCTGGCGCCGCGCATCGGCAAGCCG
TCGCTGGTGGTGTGTCTGGATTCCGGCTGCGCCAACTACGAGCAACTGTGGATGACCACGTCGCTGCGCGGCATGGTGGC
CGGCAACCTGCGGGTGGACGTACTCACGGAGGGCGTGCACTCCGGGGACGCGAGCGGAATCGTCCCGTCGTCCTTCCGCG
TGCTCCGGCAGGTGCTGTCTCGCGTGGAGGAGGAGGGCACGGGCAAGGTGCTGGTGGAGGCCCTGCACACGCAGATTCCG
GAGGCGCGGCGCGACCAGGCCCGCGCGGCGGCCAAGGTGCTGGGGGAGGAGGTCTTCACCAAGTTCCCCTGGGTGCCCGG
CATCCGCCCCATGTCGGACGACGGCGCGGAGCTGGTGCTCAACCGGACGTGGCGTCCGGCGCTGTCCGTGACGGGCGTGG
ACGGCATGCCGGCGCTCAACAGCGCGGGCAACGTGCTGCGGCCCTTCACCACGGTGAAGCTGTCCATGCGCATCCCGCCG
CGCGTGGACCCCAAGGCGGCCATGGATGCGCTGACTCAGACGCTGGTGAAGGACCCGCCTTACGGCGCGACGGTGACGTT
CGAGGGTGAGAAGTCCAGCACCGGCTGGGACGCGCCGCCGCTGGCCTCCTGGCTGTCGAACGCGGTGGAGTCCGCGTCCG
CCACCTACTTCGGCCGGCCGGCCATGGCCATGGGCGAGGGCGGCACCATCCCCTTCATGGGCATGCTGGGCGAGCGCTTC
CCGGAGGCGCAGTTCCTCATCACCGGCCTGCTGGGCCCGGGCAGCAATGCCCACGGTCCCAACGAGTTCCTCCACATTCC
CACGGGCAAGAAGCTCACCTGCTGCGTGGCCAGCGTCATCGCCGACCACTTCAAGCGGTAG

Upstream 100 bases:

>100_bases
GCCCCATCGCGGTCTTCCGCTGGGACAGTGCCACCGACGTGGACTTCAAGTGGATGTCCGTGCGCGAAATCCCCGCGGAG
CAGTGAACGGCTGACGACAG

Downstream 100 bases:

>100_bases
GCGGCTTCCGCCGGGCCCGCCTCCCAGGCTGGGGGGCGGGCGCCTCGTCCAGCGCTTCGTCGGTGAGGCGCACGGTGCGG
CGGTTCCAGGAGAACGTCAG

Product: M20 family peptidase

Products: NA

Alternate protein names: Peptidase; M20/M25/M40 Family Peptidase; Succinyl-Diaminopimelate Desuccinylase; Peptidase Family; ArgE/DapE/Acy1 Family Protein; Beta-Ala-His Dipeptidase; M20 Family Peptidase; Peptidase Dimerization Domain Protein; Peptidase Dimerisation Domain-Containing Protein; Zinc Metallopeptidase; N-Acyl-L-Amino Acid Amidohydrolase; Succinyl-Diaminopimelate Desuccinylase Protein; Deacylase; Peptidase Or Deacetlylase Family Protein; Acetylornithine Deacetylase ArgE; Metallopeptidase; Thiol Dipeptidase; Nonspecific Dipeptidase; Peptidase Dimerisation Domain Protein

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MAPAPVLPGVPGWGVFSASDGGHQRHPASWWIPAVDRGPSPVFWIRPDMAMNVQTATDSSDRIWEQEILPALERYIRIPN
KSPAFDPDWVRSGHMEAAVQLVADWCLAQAQHLPGLVLEVVRLKDEKGRERTPVIYMEVPGTKGDDTILLYGHLDKQPEM
TGWREGLTPWTPVREGDKLYGRGGADDGYSAFASLTAIRLLREQGLPHARCVVLIEACEESGSYDLPAYIEALAPRIGKP
SLVVCLDSGCANYEQLWMTTSLRGMVAGNLRVDVLTEGVHSGDASGIVPSSFRVLRQVLSRVEEEGTGKVLVEALHTQIP
EARRDQARAAAKVLGEEVFTKFPWVPGIRPMSDDGAELVLNRTWRPALSVTGVDGMPALNSAGNVLRPFTTVKLSMRIPP
RVDPKAAMDALTQTLVKDPPYGATVTFEGEKSSTGWDAPPLASWLSNAVESASATYFGRPAMAMGEGGTIPFMGMLGERF
PEAQFLITGLLGPGSNAHGPNEFLHIPTGKKLTCCVASVIADHFKR

Sequences:

>Translated_526_residues
MAPAPVLPGVPGWGVFSASDGGHQRHPASWWIPAVDRGPSPVFWIRPDMAMNVQTATDSSDRIWEQEILPALERYIRIPN
KSPAFDPDWVRSGHMEAAVQLVADWCLAQAQHLPGLVLEVVRLKDEKGRERTPVIYMEVPGTKGDDTILLYGHLDKQPEM
TGWREGLTPWTPVREGDKLYGRGGADDGYSAFASLTAIRLLREQGLPHARCVVLIEACEESGSYDLPAYIEALAPRIGKP
SLVVCLDSGCANYEQLWMTTSLRGMVAGNLRVDVLTEGVHSGDASGIVPSSFRVLRQVLSRVEEEGTGKVLVEALHTQIP
EARRDQARAAAKVLGEEVFTKFPWVPGIRPMSDDGAELVLNRTWRPALSVTGVDGMPALNSAGNVLRPFTTVKLSMRIPP
RVDPKAAMDALTQTLVKDPPYGATVTFEGEKSSTGWDAPPLASWLSNAVESASATYFGRPAMAMGEGGTIPFMGMLGERF
PEAQFLITGLLGPGSNAHGPNEFLHIPTGKKLTCCVASVIADHFKR
>Mature_525_residues
APAPVLPGVPGWGVFSASDGGHQRHPASWWIPAVDRGPSPVFWIRPDMAMNVQTATDSSDRIWEQEILPALERYIRIPNK
SPAFDPDWVRSGHMEAAVQLVADWCLAQAQHLPGLVLEVVRLKDEKGRERTPVIYMEVPGTKGDDTILLYGHLDKQPEMT
GWREGLTPWTPVREGDKLYGRGGADDGYSAFASLTAIRLLREQGLPHARCVVLIEACEESGSYDLPAYIEALAPRIGKPS
LVVCLDSGCANYEQLWMTTSLRGMVAGNLRVDVLTEGVHSGDASGIVPSSFRVLRQVLSRVEEEGTGKVLVEALHTQIPE
ARRDQARAAAKVLGEEVFTKFPWVPGIRPMSDDGAELVLNRTWRPALSVTGVDGMPALNSAGNVLRPFTTVKLSMRIPPR
VDPKAAMDALTQTLVKDPPYGATVTFEGEKSSTGWDAPPLASWLSNAVESASATYFGRPAMAMGEGGTIPFMGMLGERFP
EAQFLITGLLGPGSNAHGPNEFLHIPTGKKLTCCVASVIADHFKR

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI271398239, Length=372, Percent_Identity=26.0752688172043, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI21071039, Length=385, Percent_Identity=24.6753246753247, Blast_Score=76, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI193211059, Length=381, Percent_Identity=24.1469816272966, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17563146, Length=290, Percent_Identity=26.2068965517241, Blast_Score=83, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6321159, Length=390, Percent_Identity=24.8717948717949, Blast_Score=68, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6319758, Length=394, Percent_Identity=23.6040609137056, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24585880, Length=381, Percent_Identity=25.9842519685039, Blast_Score=77, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57129; Mature: 56998

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPAPVLPGVPGWGVFSASDGGHQRHPASWWIPAVDRGPSPVFWIRPDMAMNVQTATDSS
CCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCEEEECCCCEEEEEECCCCC
DRIWEQEILPALERYIRIPNKSPAFDPDWVRSGHMEAAVQLVADWCLAQAQHLPGLVLEV
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
VRLKDEKGRERTPVIYMEVPGTKGDDTILLYGHLDKQPEMTGWREGLTPWTPVREGDKLY
HHHHCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEE
GRGGADDGYSAFASLTAIRLLREQGLPHARCVVLIEACEESGSYDLPAYIEALAPRIGKP
CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHEEEEHHHCCCCCCCHHHHHHHCCCCCCC
SLVVCLDSGCANYEQLWMTTSLRGMVAGNLRVDVLTEGVHSGDASGIVPSSFRVLRQVLS
CEEEEECCCCCCHHHHHHHHHHCEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
RVEEEGTGKVLVEALHTQIPEARRDQARAAAKVLGEEVFTKFPWVPGIRPMSDDGAELVL
HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
NRTWRPALSVTGVDGMPALNSAGNVLRPFTTVKLSMRIPPRVDPKAAMDALTQTLVKDPP
ECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCC
YGATVTFEGEKSSTGWDAPPLASWLSNAVESASATYFGRPAMAMGEGGTIPFMGMLGERF
CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHHC
PEAQFLITGLLGPGSNAHGPNEFLHIPTGKKLTCCVASVIADHFKR
CCCEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
APAPVLPGVPGWGVFSASDGGHQRHPASWWIPAVDRGPSPVFWIRPDMAMNVQTATDSS
CCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCEEEECCCCEEEEEECCCCC
DRIWEQEILPALERYIRIPNKSPAFDPDWVRSGHMEAAVQLVADWCLAQAQHLPGLVLEV
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
VRLKDEKGRERTPVIYMEVPGTKGDDTILLYGHLDKQPEMTGWREGLTPWTPVREGDKLY
HHHHCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEE
GRGGADDGYSAFASLTAIRLLREQGLPHARCVVLIEACEESGSYDLPAYIEALAPRIGKP
CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHEEEEHHHCCCCCCCHHHHHHHCCCCCCC
SLVVCLDSGCANYEQLWMTTSLRGMVAGNLRVDVLTEGVHSGDASGIVPSSFRVLRQVLS
CEEEEECCCCCCHHHHHHHHHHCEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
RVEEEGTGKVLVEALHTQIPEARRDQARAAAKVLGEEVFTKFPWVPGIRPMSDDGAELVL
HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
NRTWRPALSVTGVDGMPALNSAGNVLRPFTTVKLSMRIPPRVDPKAAMDALTQTLVKDPP
ECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCC
YGATVTFEGEKSSTGWDAPPLASWLSNAVESASATYFGRPAMAMGEGGTIPFMGMLGERF
CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHHC
PEAQFLITGLLGPGSNAHGPNEFLHIPTGKKLTCCVASVIADHFKR
CCCEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA