| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is 108762393
Identifier: 108762393
GI number: 108762393
Start: 624930
End: 626510
Strand: Direct
Name: 108762393
Synonym: MXAN_0543
Alternate gene names: NA
Gene position: 624930-626510 (Clockwise)
Preceding gene: 108761859
Following gene: 108758891
Centisome position: 6.84
GC content: 70.02
Gene sequence:
>1581_bases TTGGCGCCCGCCCCGGTACTCCCAGGAGTGCCGGGGTGGGGCGTTTTCAGCGCATCCGATGGGGGCCATCAACGCCATCC GGCCTCCTGGTGGATTCCCGCTGTCGACAGGGGCCCCTCTCCCGTGTTCTGGATTCGGCCCGATATGGCCATGAACGTCC AGACCGCCACCGACTCGTCCGACCGCATCTGGGAGCAGGAAATCCTCCCCGCGCTCGAGCGCTACATTCGTATCCCCAAC AAGTCGCCCGCCTTCGACCCGGACTGGGTCCGCTCCGGCCACATGGAGGCCGCCGTCCAGCTCGTCGCGGACTGGTGCCT CGCGCAGGCCCAGCACCTGCCCGGCCTGGTGCTGGAGGTGGTGCGCCTCAAGGACGAGAAGGGCCGCGAGCGCACGCCGG TCATCTACATGGAGGTGCCCGGGACGAAGGGCGACGACACCATCCTCTTGTACGGCCACCTGGACAAGCAGCCGGAGATG ACGGGTTGGCGCGAGGGCCTGACGCCGTGGACGCCGGTGCGCGAGGGCGACAAGCTCTACGGGCGCGGCGGCGCGGATGA CGGCTACTCCGCCTTCGCGTCGCTCACCGCCATCCGCCTGCTGCGCGAGCAGGGCCTGCCGCACGCGCGCTGCGTGGTGC TCATCGAGGCGTGCGAGGAGAGCGGCAGCTACGACTTGCCGGCCTACATCGAGGCGCTGGCGCCGCGCATCGGCAAGCCG TCGCTGGTGGTGTGTCTGGATTCCGGCTGCGCCAACTACGAGCAACTGTGGATGACCACGTCGCTGCGCGGCATGGTGGC CGGCAACCTGCGGGTGGACGTACTCACGGAGGGCGTGCACTCCGGGGACGCGAGCGGAATCGTCCCGTCGTCCTTCCGCG TGCTCCGGCAGGTGCTGTCTCGCGTGGAGGAGGAGGGCACGGGCAAGGTGCTGGTGGAGGCCCTGCACACGCAGATTCCG GAGGCGCGGCGCGACCAGGCCCGCGCGGCGGCCAAGGTGCTGGGGGAGGAGGTCTTCACCAAGTTCCCCTGGGTGCCCGG CATCCGCCCCATGTCGGACGACGGCGCGGAGCTGGTGCTCAACCGGACGTGGCGTCCGGCGCTGTCCGTGACGGGCGTGG ACGGCATGCCGGCGCTCAACAGCGCGGGCAACGTGCTGCGGCCCTTCACCACGGTGAAGCTGTCCATGCGCATCCCGCCG CGCGTGGACCCCAAGGCGGCCATGGATGCGCTGACTCAGACGCTGGTGAAGGACCCGCCTTACGGCGCGACGGTGACGTT CGAGGGTGAGAAGTCCAGCACCGGCTGGGACGCGCCGCCGCTGGCCTCCTGGCTGTCGAACGCGGTGGAGTCCGCGTCCG CCACCTACTTCGGCCGGCCGGCCATGGCCATGGGCGAGGGCGGCACCATCCCCTTCATGGGCATGCTGGGCGAGCGCTTC CCGGAGGCGCAGTTCCTCATCACCGGCCTGCTGGGCCCGGGCAGCAATGCCCACGGTCCCAACGAGTTCCTCCACATTCC CACGGGCAAGAAGCTCACCTGCTGCGTGGCCAGCGTCATCGCCGACCACTTCAAGCGGTAG
Upstream 100 bases:
>100_bases GCCCCATCGCGGTCTTCCGCTGGGACAGTGCCACCGACGTGGACTTCAAGTGGATGTCCGTGCGCGAAATCCCCGCGGAG CAGTGAACGGCTGACGACAG
Downstream 100 bases:
>100_bases GCGGCTTCCGCCGGGCCCGCCTCCCAGGCTGGGGGGCGGGCGCCTCGTCCAGCGCTTCGTCGGTGAGGCGCACGGTGCGG CGGTTCCAGGAGAACGTCAG
Product: M20 family peptidase
Products: NA
Alternate protein names: Peptidase; M20/M25/M40 Family Peptidase; Succinyl-Diaminopimelate Desuccinylase; Peptidase Family; ArgE/DapE/Acy1 Family Protein; Beta-Ala-His Dipeptidase; M20 Family Peptidase; Peptidase Dimerization Domain Protein; Peptidase Dimerisation Domain-Containing Protein; Zinc Metallopeptidase; N-Acyl-L-Amino Acid Amidohydrolase; Succinyl-Diaminopimelate Desuccinylase Protein; Deacylase; Peptidase Or Deacetlylase Family Protein; Acetylornithine Deacetylase ArgE; Metallopeptidase; Thiol Dipeptidase; Nonspecific Dipeptidase; Peptidase Dimerisation Domain Protein
Number of amino acids: Translated: 526; Mature: 525
Protein sequence:
>526_residues MAPAPVLPGVPGWGVFSASDGGHQRHPASWWIPAVDRGPSPVFWIRPDMAMNVQTATDSSDRIWEQEILPALERYIRIPN KSPAFDPDWVRSGHMEAAVQLVADWCLAQAQHLPGLVLEVVRLKDEKGRERTPVIYMEVPGTKGDDTILLYGHLDKQPEM TGWREGLTPWTPVREGDKLYGRGGADDGYSAFASLTAIRLLREQGLPHARCVVLIEACEESGSYDLPAYIEALAPRIGKP SLVVCLDSGCANYEQLWMTTSLRGMVAGNLRVDVLTEGVHSGDASGIVPSSFRVLRQVLSRVEEEGTGKVLVEALHTQIP EARRDQARAAAKVLGEEVFTKFPWVPGIRPMSDDGAELVLNRTWRPALSVTGVDGMPALNSAGNVLRPFTTVKLSMRIPP RVDPKAAMDALTQTLVKDPPYGATVTFEGEKSSTGWDAPPLASWLSNAVESASATYFGRPAMAMGEGGTIPFMGMLGERF PEAQFLITGLLGPGSNAHGPNEFLHIPTGKKLTCCVASVIADHFKR
Sequences:
>Translated_526_residues MAPAPVLPGVPGWGVFSASDGGHQRHPASWWIPAVDRGPSPVFWIRPDMAMNVQTATDSSDRIWEQEILPALERYIRIPN KSPAFDPDWVRSGHMEAAVQLVADWCLAQAQHLPGLVLEVVRLKDEKGRERTPVIYMEVPGTKGDDTILLYGHLDKQPEM TGWREGLTPWTPVREGDKLYGRGGADDGYSAFASLTAIRLLREQGLPHARCVVLIEACEESGSYDLPAYIEALAPRIGKP SLVVCLDSGCANYEQLWMTTSLRGMVAGNLRVDVLTEGVHSGDASGIVPSSFRVLRQVLSRVEEEGTGKVLVEALHTQIP EARRDQARAAAKVLGEEVFTKFPWVPGIRPMSDDGAELVLNRTWRPALSVTGVDGMPALNSAGNVLRPFTTVKLSMRIPP RVDPKAAMDALTQTLVKDPPYGATVTFEGEKSSTGWDAPPLASWLSNAVESASATYFGRPAMAMGEGGTIPFMGMLGERF PEAQFLITGLLGPGSNAHGPNEFLHIPTGKKLTCCVASVIADHFKR >Mature_525_residues APAPVLPGVPGWGVFSASDGGHQRHPASWWIPAVDRGPSPVFWIRPDMAMNVQTATDSSDRIWEQEILPALERYIRIPNK SPAFDPDWVRSGHMEAAVQLVADWCLAQAQHLPGLVLEVVRLKDEKGRERTPVIYMEVPGTKGDDTILLYGHLDKQPEMT GWREGLTPWTPVREGDKLYGRGGADDGYSAFASLTAIRLLREQGLPHARCVVLIEACEESGSYDLPAYIEALAPRIGKPS LVVCLDSGCANYEQLWMTTSLRGMVAGNLRVDVLTEGVHSGDASGIVPSSFRVLRQVLSRVEEEGTGKVLVEALHTQIPE ARRDQARAAAKVLGEEVFTKFPWVPGIRPMSDDGAELVLNRTWRPALSVTGVDGMPALNSAGNVLRPFTTVKLSMRIPPR VDPKAAMDALTQTLVKDPPYGATVTFEGEKSSTGWDAPPLASWLSNAVESASATYFGRPAMAMGEGGTIPFMGMLGERFP EAQFLITGLLGPGSNAHGPNEFLHIPTGKKLTCCVASVIADHFKR
Specific function: Unknown
COG id: COG0624
COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI271398239, Length=372, Percent_Identity=26.0752688172043, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI21071039, Length=385, Percent_Identity=24.6753246753247, Blast_Score=76, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193211059, Length=381, Percent_Identity=24.1469816272966, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17563146, Length=290, Percent_Identity=26.2068965517241, Blast_Score=83, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6321159, Length=390, Percent_Identity=24.8717948717949, Blast_Score=68, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6319758, Length=394, Percent_Identity=23.6040609137056, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI24585880, Length=381, Percent_Identity=25.9842519685039, Blast_Score=77, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57129; Mature: 56998
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPAPVLPGVPGWGVFSASDGGHQRHPASWWIPAVDRGPSPVFWIRPDMAMNVQTATDSS CCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCEEEECCCCEEEEEECCCCC DRIWEQEILPALERYIRIPNKSPAFDPDWVRSGHMEAAVQLVADWCLAQAQHLPGLVLEV HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHH VRLKDEKGRERTPVIYMEVPGTKGDDTILLYGHLDKQPEMTGWREGLTPWTPVREGDKLY HHHHCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEE GRGGADDGYSAFASLTAIRLLREQGLPHARCVVLIEACEESGSYDLPAYIEALAPRIGKP CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHEEEEHHHCCCCCCCHHHHHHHCCCCCCC SLVVCLDSGCANYEQLWMTTSLRGMVAGNLRVDVLTEGVHSGDASGIVPSSFRVLRQVLS CEEEEECCCCCCHHHHHHHHHHCEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH RVEEEGTGKVLVEALHTQIPEARRDQARAAAKVLGEEVFTKFPWVPGIRPMSDDGAELVL HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE NRTWRPALSVTGVDGMPALNSAGNVLRPFTTVKLSMRIPPRVDPKAAMDALTQTLVKDPP ECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCC YGATVTFEGEKSSTGWDAPPLASWLSNAVESASATYFGRPAMAMGEGGTIPFMGMLGERF CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHHC PEAQFLITGLLGPGSNAHGPNEFLHIPTGKKLTCCVASVIADHFKR CCCEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure APAPVLPGVPGWGVFSASDGGHQRHPASWWIPAVDRGPSPVFWIRPDMAMNVQTATDSS CCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCEEEECCCCEEEEEECCCCC DRIWEQEILPALERYIRIPNKSPAFDPDWVRSGHMEAAVQLVADWCLAQAQHLPGLVLEV HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHH VRLKDEKGRERTPVIYMEVPGTKGDDTILLYGHLDKQPEMTGWREGLTPWTPVREGDKLY HHHHCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEE GRGGADDGYSAFASLTAIRLLREQGLPHARCVVLIEACEESGSYDLPAYIEALAPRIGKP CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHEEEEHHHCCCCCCCHHHHHHHCCCCCCC SLVVCLDSGCANYEQLWMTTSLRGMVAGNLRVDVLTEGVHSGDASGIVPSSFRVLRQVLS CEEEEECCCCCCHHHHHHHHHHCEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH RVEEEGTGKVLVEALHTQIPEARRDQARAAAKVLGEEVFTKFPWVPGIRPMSDDGAELVL HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE NRTWRPALSVTGVDGMPALNSAGNVLRPFTTVKLSMRIPPRVDPKAAMDALTQTLVKDPP ECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCC YGATVTFEGEKSSTGWDAPPLASWLSNAVESASATYFGRPAMAMGEGGTIPFMGMLGERF CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHHC PEAQFLITGLLGPGSNAHGPNEFLHIPTGKKLTCCVASVIADHFKR CCCEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA