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The map label for this gene is algU [H]

Identifier: 108762333

GI number: 108762333

Start: 5929007

End: 5929633

Strand: Reverse

Name: algU [H]

Synonym: MXAN_4733

Alternate gene names: 108762333

Gene position: 5929633-5929007 (Counterclockwise)

Preceding gene: 108760317

Following gene: 108757647

Centisome position: 64.88

GC content: 69.38

Gene sequence:

>627_bases
GTGTCATCGGGCGGCGTGCTCGAAATCGGACAGGAAGAGGCCGCCGCGGACGCGCCCGAGTCGCGCCGTCAGGACGCGGC
GCTGCTGGCCCGGCTGCGCCGGGGGGAGCCGGACGCCTTCGAGCTGCTGGTGCGCACCCACCAGGACCGGCTCTACGATT
TCTGCGTCCGCATGGTGGGAGACCGTGAGGAAGCTCACGACCTGGTGCAGGAAATCTTCGTCAGCGTGCACCAGAACGTC
CGCCGCTTCCGCGAGGACTCGAAGCTGTCCACCTGGCTGTTCCGCATCACCCGCAACCACTGCATCAACCGGCTCAAGTA
CCTGAAGCGCCGGGGCCGGGGCCGCTCCGAAGTGTTCGACGAGGCCGCGGCCCTGCTCTCCGAAGGTGGGGGCACCGCGC
CCGGCCCGGATGCGGCCCTGGAATCCGCGCGTGAGCGCGCCCGGGTGCAGTGGGCCATCTCCCAACTGGAGCCGGACGCA
CGCATGCTGGTGGCGCTGCGCGACATCGAAGGCCTCAGCTACGACGAAATCATCGACATCACCGAGCTACCGGAGGGCAC
GGTGAAGAGCCGGCTCCACCGGGCCCGGGAAAAGCTGGCGGACCTCCTGGGGCGGCTTGAGCCATGA

Upstream 100 bases:

>100_bases
TTTCCGCGGCCCTGCTGTCCGAGGGCCGCGGGGCAGGGGACCAAGGTAGGCTGAGGGACGGTGGCACCTCCTGCGGAGGG
GCTGTCGCGGGAGGACACGC

Downstream 100 bases:

>100_bases
ACGGCATTCATCGCAGACTGCGGGACGTGGAACCGCGGATGAACCATCGCGAGGCGAGGGCCCTGTTCCTCGCGCTCGCC
GACGACGAGCTTCCCGCCCC

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MSSGGVLEIGQEEAAADAPESRRQDAALLARLRRGEPDAFELLVRTHQDRLYDFCVRMVGDREEAHDLVQEIFVSVHQNV
RRFREDSKLSTWLFRITRNHCINRLKYLKRRGRGRSEVFDEAAALLSEGGGTAPGPDAALESARERARVQWAISQLEPDA
RMLVALRDIEGLSYDEIIDITELPEGTVKSRLHRAREKLADLLGRLEP

Sequences:

>Translated_208_residues
MSSGGVLEIGQEEAAADAPESRRQDAALLARLRRGEPDAFELLVRTHQDRLYDFCVRMVGDREEAHDLVQEIFVSVHQNV
RRFREDSKLSTWLFRITRNHCINRLKYLKRRGRGRSEVFDEAAALLSEGGGTAPGPDAALESARERARVQWAISQLEPDA
RMLVALRDIEGLSYDEIIDITELPEGTVKSRLHRAREKLADLLGRLEP
>Mature_207_residues
SSGGVLEIGQEEAAADAPESRRQDAALLARLRRGEPDAFELLVRTHQDRLYDFCVRMVGDREEAHDLVQEIFVSVHQNVR
RFREDSKLSTWLFRITRNHCINRLKYLKRRGRGRSEVFDEAAALLSEGGGTAPGPDAALESARERARVQWAISQLEPDAR
MLVALRDIEGLSYDEIIDITELPEGTVKSRLHRAREKLADLLGRLEP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=181, Percent_Identity=37.5690607734807, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23600; Mature: 23469

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGGVLEIGQEEAAADAPESRRQDAALLARLRRGEPDAFELLVRTHQDRLYDFCVRMVG
CCCCCCEEECCHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
DREEAHDLVQEIFVSVHQNVRRFREDSKLSTWLFRITRNHCINRLKYLKRRGRGRSEVFD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
EAAALLSEGGGTAPGPDAALESARERARVQWAISQLEPDARMLVALRDIEGLSYDEIIDI
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
TELPEGTVKSRLHRAREKLADLLGRLEP
HHCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSGGVLEIGQEEAAADAPESRRQDAALLARLRRGEPDAFELLVRTHQDRLYDFCVRMVG
CCCCCEEECCHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
DREEAHDLVQEIFVSVHQNVRRFREDSKLSTWLFRITRNHCINRLKYLKRRGRGRSEVFD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
EAAALLSEGGGTAPGPDAALESARERARVQWAISQLEPDARMLVALRDIEGLSYDEIIDI
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
TELPEGTVKSRLHRAREKLADLLGRLEP
HHCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]