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The map label for this gene is rpoE1 [H]

Identifier: 108762328

GI number: 108762328

Start: 5094600

End: 5095241

Strand: Direct

Name: rpoE1 [H]

Synonym: MXAN_4147

Alternate gene names: 108762328

Gene position: 5094600-5095241 (Clockwise)

Preceding gene: 108760086

Following gene: 108758875

Centisome position: 55.74

GC content: 64.17

Gene sequence:

>642_bases
ATGTTGGATTTCAGGCAACCCAACCGGACGAAGCAGGAATTCGAAGAGCTGGCGCTAGCCCATCTGGACCCGCTCTATTC
GGCGGCGCTGCGCCTGACGAAGAACGAGCGCGACGCCGAGGACCTGGTGCAGGACACCTGCATGCGGGCGTACCGCTTCT
TCGACAAGTTCGAGCGCGGGACGAACATCAAGGCCTGGCTCTTCAAGATTCTCACCAACACCTTCATCAACCGCTACCGG
CGGAAGGTGAAGGAGCGCACGGTGGTCGAAGGCGTGGAGCGCGAGGCCGTCCACGAGCGCTTCGTGAGCCGGGACGCGAC
GGACTTCGCGGCCAACCCCGAGCAGTACTTCTTCGACCGGCTCCTGTCGGACGACGTGCTGCGGGCCATTGACGCGCTGC
CCATCGACTTCCGGCTGGTGGTCATCCTCGCGGACCTCCAGGAGTTCTCCTACAAGGAGATCGCGGAGATTCTCGAGTGC
CCCGTGGGCACGGTCATGAGCCGCCTGTTCCGCGGACGCAAGCTCCTGCAGAAGAACCTGCGTGAGTACGCCGAGGGCCA
GGGCGTCTTCCGGCACGACGGGGAGCCGGTGAACGCCCCCGCGGACCTGGAAGAGTATCGCCACAGGAAGAAGACAGGGT
AG

Upstream 100 bases:

>100_bases
TCGTGGGATGCCGTTGTTGCCCTGGTTGTTCCCGTGCATACATTTGGCGGGTAAGCGACAACTCATTCCCCTTTTGTTTC
GGGCCCTTGGAAGGCGGGAC

Downstream 100 bases:

>100_bases
AAACCCGTTCCTAGCGCGCGCCATGAACTGCCAGGACCTCGAACGGCTGCTCTATCCGTACCTCGACGGCGAATTCCAGC
CCGAGGAACGAGTGGACCTC

Product: RNA polymerase sigma factor RpoE1

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MLDFRQPNRTKQEFEELALAHLDPLYSAALRLTKNERDAEDLVQDTCMRAYRFFDKFERGTNIKAWLFKILTNTFINRYR
RKVKERTVVEGVEREAVHERFVSRDATDFAANPEQYFFDRLLSDDVLRAIDALPIDFRLVVILADLQEFSYKEIAEILEC
PVGTVMSRLFRGRKLLQKNLREYAEGQGVFRHDGEPVNAPADLEEYRHRKKTG

Sequences:

>Translated_213_residues
MLDFRQPNRTKQEFEELALAHLDPLYSAALRLTKNERDAEDLVQDTCMRAYRFFDKFERGTNIKAWLFKILTNTFINRYR
RKVKERTVVEGVEREAVHERFVSRDATDFAANPEQYFFDRLLSDDVLRAIDALPIDFRLVVILADLQEFSYKEIAEILEC
PVGTVMSRLFRGRKLLQKNLREYAEGQGVFRHDGEPVNAPADLEEYRHRKKTG
>Mature_213_residues
MLDFRQPNRTKQEFEELALAHLDPLYSAALRLTKNERDAEDLVQDTCMRAYRFFDKFERGTNIKAWLFKILTNTFINRYR
RKVKERTVVEGVEREAVHERFVSRDATDFAANPEQYFFDRLLSDDVLRAIDALPIDFRLVVILADLQEFSYKEIAEILEC
PVGTVMSRLFRGRKLLQKNLREYAEGQGVFRHDGEPVNAPADLEEYRHRKKTG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=148, Percent_Identity=35.1351351351351, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 25110; Mature: 25110

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDFRQPNRTKQEFEELALAHLDPLYSAALRLTKNERDAEDLVQDTCMRAYRFFDKFERG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
TNIKAWLFKILTNTFINRYRRKVKERTVVEGVEREAVHERFVSRDATDFAANPEQYFFDR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHH
LLSDDVLRAIDALPIDFRLVVILADLQEFSYKEIAEILECPVGTVMSRLFRGRKLLQKNL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
REYAEGQGVFRHDGEPVNAPADLEEYRHRKKTG
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MLDFRQPNRTKQEFEELALAHLDPLYSAALRLTKNERDAEDLVQDTCMRAYRFFDKFERG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
TNIKAWLFKILTNTFINRYRRKVKERTVVEGVEREAVHERFVSRDATDFAANPEQYFFDR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHH
LLSDDVLRAIDALPIDFRLVVILADLQEFSYKEIAEILECPVGTVMSRLFRGRKLLQKNL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
REYAEGQGVFRHDGEPVNAPADLEEYRHRKKTG
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]