| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is dmpH [H]
Identifier: 108762234
GI number: 108762234
Start: 1054379
End: 1055164
Strand: Direct
Name: dmpH [H]
Synonym: MXAN_0925
Alternate gene names: 108762234
Gene position: 1054379-1055164 (Clockwise)
Preceding gene: 108762268
Following gene: 108761432
Centisome position: 11.54
GC content: 68.07
Gene sequence:
>786_bases ATGACCGCGACCGTGGACCACGAGGCACTGGCACATTTCCTGGACTCGGCCAGGCTGGAGCGTCGCGAGGTGGCGCCCCT CACCCGCGAGCAACCCGCGTTGAGCGTGCCGGATGCCTACGCCATCCAGGAGGCCGGAATCCGGCTGCGCCTGTCCCACG GCGAGCGCGTGGTGGGCTTGAAGATGGGCCTCACCTCCGAGGCCAAGCGCAAGCAGATGAACCTGGACTCGCCCGTGTAT GGCGTACTCACGGACCGGATGCAGGTGCCCGCTGGCGGCGTGATTCAACTGTCACAGGGCGTCCACCCCAAAATCGAGCC GGAGATTGCCTTCCGCACCGCGCGTGAGCTTCGCGGCACGGTGACGCGCGACGAGGTGCTGGACGCCTGCGAGTCCGTGT TCGCGGCGATGGAAATCCTCGACTCGCGCTACCGCGACTTCAAGTACTTCTCCCTGCCGGACGTGGTGGCGGACAACGCG TCGTCCTCGCTGTTCGTGCTGGGCACCGCCGAGCATCCTCCGCGCGCGATGGACCTCACGCGGCTGGAGATGACCCTGTC GGTGAATGGCGAGCCCGTTCAATCCGCCCGCGCGGATGCCATCTCTGGCGACCCTGTCGTCTCCGTCATCCAGTTGTGTG AGCTGTTGGCCCAGCGCGGCCAGGTGTTGCCGGCGGGGAGCATCGTGCTCGCGGGCGCCGCCACCGCGGCGCACATGCTG CGCCCGGGGGACCGGGTGCAACTCACGGTGGAAGGACTGGGCATCGTGGCGGTGTCCGCCGAGTAA
Upstream 100 bases:
>100_bases CGAGACTTGCGCGTCCGCGTTCGGGTGCCGGAAGCTCCGCGCCACCATCCGGGTGGTGCGCCATCCTGGCGTGGCCGGAA CGACCAAGAGAGGGACGGGG
Downstream 100 bases:
>100_bases CGCCGGGCGCTACCCGTCGAGCGGAGCGCCCGCCGCTTCCATTACGGGTCGAGGCGCGCGCGTGGATGACAGGCGCTGGA GCAGGTGCCACGCCAGCTCC
Product: putative 4-oxalocrotonate decarboxylase
Products: NA
Alternate protein names: 4-OD [H]
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MTATVDHEALAHFLDSARLERREVAPLTREQPALSVPDAYAIQEAGIRLRLSHGERVVGLKMGLTSEAKRKQMNLDSPVY GVLTDRMQVPAGGVIQLSQGVHPKIEPEIAFRTARELRGTVTRDEVLDACESVFAAMEILDSRYRDFKYFSLPDVVADNA SSSLFVLGTAEHPPRAMDLTRLEMTLSVNGEPVQSARADAISGDPVVSVIQLCELLAQRGQVLPAGSIVLAGAATAAHML RPGDRVQLTVEGLGIVAVSAE
Sequences:
>Translated_261_residues MTATVDHEALAHFLDSARLERREVAPLTREQPALSVPDAYAIQEAGIRLRLSHGERVVGLKMGLTSEAKRKQMNLDSPVY GVLTDRMQVPAGGVIQLSQGVHPKIEPEIAFRTARELRGTVTRDEVLDACESVFAAMEILDSRYRDFKYFSLPDVVADNA SSSLFVLGTAEHPPRAMDLTRLEMTLSVNGEPVQSARADAISGDPVVSVIQLCELLAQRGQVLPAGSIVLAGAATAAHML RPGDRVQLTVEGLGIVAVSAE >Mature_260_residues TATVDHEALAHFLDSARLERREVAPLTREQPALSVPDAYAIQEAGIRLRLSHGERVVGLKMGLTSEAKRKQMNLDSPVYG VLTDRMQVPAGGVIQLSQGVHPKIEPEIAFRTARELRGTVTRDEVLDACESVFAAMEILDSRYRDFKYFSLPDVVADNAS SSLFVLGTAEHPPRAMDLTRLEMTLSVNGEPVQSARADAISGDPVVSVIQLCELLAQRGQVLPAGSIVLAGAATAAHMLR PGDRVQLTVEGLGIVAVSAE
Specific function: 3-hydroxyphenylpropionate degradation. [C]
COG id: COG3971
COG function: function code Q; 2-keto-4-pentenoate hydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hydratase/decarboxylase family [H]
Homologues:
Organism=Escherichia coli, GI87081722, Length=253, Percent_Identity=34.7826086956522, Blast_Score=136, Evalue=2e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017630 - InterPro: IPR002529 - InterPro: IPR011234 [H]
Pfam domain/function: PF01557 FAA_hydrolase [H]
EC number: =4.1.1.77 [H]
Molecular weight: Translated: 28118; Mature: 27986
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATVDHEALAHFLDSARLERREVAPLTREQPALSVPDAYAIQEAGIRLRLSHGERVVGL CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCEEEEECCCCEEEEE KMGLTSEAKRKQMNLDSPVYGVLTDRMQVPAGGVIQLSQGVHPKIEPEIAFRTARELRGT EECCCCHHHHHHCCCCCCCHHHHHCCEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHCC VTRDEVLDACESVFAAMEILDSRYRDFKYFSLPDVVADNASSSLFVLGTAEHPPRAMDLT CCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHCCCCCCEEEEECCCCCCCCCCEE RLEMTLSVNGEPVQSARADAISGDPVVSVIQLCELLAQRGQVLPAGSIVLAGAATAAHML EEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHC RPGDRVQLTVEGLGIVAVSAE CCCCEEEEEEECCEEEEEECC >Mature Secondary Structure TATVDHEALAHFLDSARLERREVAPLTREQPALSVPDAYAIQEAGIRLRLSHGERVVGL CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCEEEEECCCCEEEEE KMGLTSEAKRKQMNLDSPVYGVLTDRMQVPAGGVIQLSQGVHPKIEPEIAFRTARELRGT EECCCCHHHHHHCCCCCCCHHHHHCCEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHCC VTRDEVLDACESVFAAMEILDSRYRDFKYFSLPDVVADNASSSLFVLGTAEHPPRAMDLT CCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHCCCCCCEEEEECCCCCCCCCCEE RLEMTLSVNGEPVQSARADAISGDPVVSVIQLCELLAQRGQVLPAGSIVLAGAATAAHML EEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHC RPGDRVQLTVEGLGIVAVSAE CCCCEEEEEEECCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1732207 [H]