| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
Click here to switch to the map view.
The map label for this gene is pimB [H]
Identifier: 108762198
GI number: 108762198
Start: 6638572
End: 6640812
Strand: Direct
Name: pimB [H]
Synonym: MXAN_5333
Alternate gene names: 108762198
Gene position: 6638572-6640812 (Clockwise)
Preceding gene: 108762267
Following gene: 108762811
Centisome position: 72.63
GC content: 70.37
Gene sequence:
>2241_bases ATGGCGATCCACCAGTTGATACCGAGCTTTGTCCCCGGCGACGCCACCGGGCAGGCCGCGCTGCACCTGCAGCTCCTGCT GCGCCGCATGGGGCACGCGGGCGCGCTGTATGCGGACGAGGTGGGCCCGGGGCTCGAAGGGCTGGCCAGCCCCGCGTCCG CGCTGCGTCCCGAGCCCGGTGACCTGGTCCTCTACCACCATGGCATCGCCTCCCCGCTCAGCAGCCGGCTGATGCACCTG CCCTGCCGACGCGGCATCGTCTTCCACAACATCAGCCCCGCGCGGTTCTACGAAGGGCTGCCGCTGGCGGACGCGCTGGT GGCGGGACGGGCCCAGCTCGCCGCGATGGCCCCCTTCGCGGATGTGGCCATCGGCGTGTCGGACTTCAACGCCGCCGAGC TGCGCGTCGCGGGTTACCGCAACGTCCACACGGTGCCCCTCTTCATCGAACCGGAGCGATTCTCCCGCGCCAGCGCGGAC GCGAAGATGCTCCAGCGGCTCGAAGGTCCAGGCCCCGTGCTGCTCGGCGTGAGCCGGGTCATGCCGCACAAGCGCTTCGA GGACCTGCTCGCGCTCCACCGCGAAGTCCTGCGGTTGCGCCCCCAGGCCCGCCTGTTGATGGTGGGCGGCTACGAGCCGG GCAGCCGGTACTTCCGCATGCTCCAGCGCGAGGCGCGCGGCCTGCGCGGCGTGAGCTTCCTGGGGCGCCTGAGCCACGCG CAGCTCGTGGCCGCGTACCGCTCCGCTTCCGTCTTCGTCTCCATGAGCGAGCATGAGGGCTTCGGTGTCCCCCTCATCGA GGCCATGGCCGCCGAGGTGCCCGTGCTGGCCTACGCGGCCGCCGCGGTGCCGGAGACCCTGGGCGGCGCGGGCGTGGCCT TCGACCAGAAGCGCTTCGCCTTCCTCGCGGAGCTGGCGGTGGACCTGAGCGAGGACGTCTCCCTGCGCGGGCCCGTCATC GCTGGACAGGCGCGGCGGTTGGAGCACTTCTCCGCGCCTTCCGTGCAGACCGCCTTCACGAAGGCACTGGAAACGGTGCT CCCCCGCCCCACGCCCACGAAGTCCCGGAAGGTTCCGGAGCGTCCCCGGGTGGCGATGGTGGTGCAGCGCTACGGCGAGG TGACGGGCGGCGCGGAGAAGCTCGCCGCGCAAATGGCCGAGCACCTGGCGCCGCACTGGGACCTCACCTTGCTGACGACC TGCGCGAAGAACCACCTCGTGTGGGACAACGCGTTTCCGCCCGGCCCCGACGTCGTGGACGGCATCAAGGTGTTGCGCTT CCCGTCCACGCGGGTGCGTAACATCCGAGGCTTCAACGGCCTGTCGCGGCAGGTGTTCGACAAGAGCAACGAGCGGCTGC GTGAAGAGCAGTGGGTGGCCGAGCAGGGCCCCATGTGCCCCGGCCTGCTGCACCACCTGGCCACCGAGCGCGACGCCTAC GACGGCTATCTCTTCTTCACCTACCTCTACGCGCCCACGGTGTGGGGACTGCCGCTGGTGGCGGACCGGTCCCTGCTGGT GCCCACCACACATGATGAGGCCCCCGTCCGCTTCGGTGTGTATCGGGACGTCTTCGAACGCCCGCGCGCCCTGCTCTGCC TCACGCCGGAGGAGCACACGCTCATCGAGAAGTACTTCCCGAATCACGCACCCACGCGCGTGGTGGGCGTGGGCGTGGAC CGGCCTCGGGCGGATGGCGCGCGCTTCAAGGAGAAGCACGGCATCCACCGGCACTACCTGCTCTACATCGGCCGTCAGGA GCCGGGCAAAGGCGTGCCTGAGCTGCTCGAGTACCACCAGGCCCTGAAGAACCGGTTCGAGGACGCGCCGGACCTGGTGC TCGCGGGCGACACCAACATGGAGCTGTCCGGCGAGGGCGTGCGCTATCTGGGCCGTATCGACGAGCAGGACAAACACGAC GCGCTGGCGGGGGCGTTGGCGGTGGTGGTGCCGTCCCGCTACGAGAGCCTGTCGCTGCTGACGCTGGAGTCCTTCGCCCA GGGCACGCCCGTGCTCGTGAACGGGCGCTCGGACGTGCTGGTGGGGCAGGTGGAGCGCAGCGGCGCGGGCCGCGCGTACA CGGACCTGGAGTCGTTCATCCAGGGCCTGCGCGAGGTGGGCTCGGAGCGTGAGCCCATGGGCAAGCGGGGCCTGGCGTAC GTGAAGAAGCAGGGCTGGCCGCAGGTGGTGGCGGCCTACCGGGAAGAAATGCAACGCATCCTCGAGGAGAAGCGCCGATG A
Upstream 100 bases:
>100_bases ATACCGGTGGTCGGCTCGTCCCAGAGTGTCGCGTCGAAGGCGATAGGTCCCATGGACACGGTGCGCCTCATAGCACGTGC GTGTGATAGGCAGGGCCCAC
Downstream 100 bases:
>100_bases AGTTACTGGGACGGGACATCCCCGCGCGGGAGCTGATAGCTCGCATCGAGGAGCGCCTGCGCACGCGTGGCCTCCCCACC TCCGAGGAAGTGGAGCTGCC
Product: group 1 glycosyl transferase
Products: NA
Alternate protein names: Alpha-D-mannose-alpha-(1-6)-phosphatidylmyo-inositol-mannosyltransferase; Alpha-mannosyltransferase; Alpha-manT; Guanosine diphosphomannose-phosphatidyl-inositol alpha-mannosyltransferase; Phosphatidylinositol alpha-mannosyltransferase; PI alpha-mannosyltransferase [H]
Number of amino acids: Translated: 746; Mature: 745
Protein sequence:
>746_residues MAIHQLIPSFVPGDATGQAALHLQLLLRRMGHAGALYADEVGPGLEGLASPASALRPEPGDLVLYHHGIASPLSSRLMHL PCRRGIVFHNISPARFYEGLPLADALVAGRAQLAAMAPFADVAIGVSDFNAAELRVAGYRNVHTVPLFIEPERFSRASAD AKMLQRLEGPGPVLLGVSRVMPHKRFEDLLALHREVLRLRPQARLLMVGGYEPGSRYFRMLQREARGLRGVSFLGRLSHA QLVAAYRSASVFVSMSEHEGFGVPLIEAMAAEVPVLAYAAAAVPETLGGAGVAFDQKRFAFLAELAVDLSEDVSLRGPVI AGQARRLEHFSAPSVQTAFTKALETVLPRPTPTKSRKVPERPRVAMVVQRYGEVTGGAEKLAAQMAEHLAPHWDLTLLTT CAKNHLVWDNAFPPGPDVVDGIKVLRFPSTRVRNIRGFNGLSRQVFDKSNERLREEQWVAEQGPMCPGLLHHLATERDAY DGYLFFTYLYAPTVWGLPLVADRSLLVPTTHDEAPVRFGVYRDVFERPRALLCLTPEEHTLIEKYFPNHAPTRVVGVGVD RPRADGARFKEKHGIHRHYLLYIGRQEPGKGVPELLEYHQALKNRFEDAPDLVLAGDTNMELSGEGVRYLGRIDEQDKHD ALAGALAVVVPSRYESLSLLTLESFAQGTPVLVNGRSDVLVGQVERSGAGRAYTDLESFIQGLREVGSEREPMGKRGLAY VKKQGWPQVVAAYREEMQRILEEKRR
Sequences:
>Translated_746_residues MAIHQLIPSFVPGDATGQAALHLQLLLRRMGHAGALYADEVGPGLEGLASPASALRPEPGDLVLYHHGIASPLSSRLMHL PCRRGIVFHNISPARFYEGLPLADALVAGRAQLAAMAPFADVAIGVSDFNAAELRVAGYRNVHTVPLFIEPERFSRASAD AKMLQRLEGPGPVLLGVSRVMPHKRFEDLLALHREVLRLRPQARLLMVGGYEPGSRYFRMLQREARGLRGVSFLGRLSHA QLVAAYRSASVFVSMSEHEGFGVPLIEAMAAEVPVLAYAAAAVPETLGGAGVAFDQKRFAFLAELAVDLSEDVSLRGPVI AGQARRLEHFSAPSVQTAFTKALETVLPRPTPTKSRKVPERPRVAMVVQRYGEVTGGAEKLAAQMAEHLAPHWDLTLLTT CAKNHLVWDNAFPPGPDVVDGIKVLRFPSTRVRNIRGFNGLSRQVFDKSNERLREEQWVAEQGPMCPGLLHHLATERDAY DGYLFFTYLYAPTVWGLPLVADRSLLVPTTHDEAPVRFGVYRDVFERPRALLCLTPEEHTLIEKYFPNHAPTRVVGVGVD RPRADGARFKEKHGIHRHYLLYIGRQEPGKGVPELLEYHQALKNRFEDAPDLVLAGDTNMELSGEGVRYLGRIDEQDKHD ALAGALAVVVPSRYESLSLLTLESFAQGTPVLVNGRSDVLVGQVERSGAGRAYTDLESFIQGLREVGSEREPMGKRGLAY VKKQGWPQVVAAYREEMQRILEEKRR >Mature_745_residues AIHQLIPSFVPGDATGQAALHLQLLLRRMGHAGALYADEVGPGLEGLASPASALRPEPGDLVLYHHGIASPLSSRLMHLP CRRGIVFHNISPARFYEGLPLADALVAGRAQLAAMAPFADVAIGVSDFNAAELRVAGYRNVHTVPLFIEPERFSRASADA KMLQRLEGPGPVLLGVSRVMPHKRFEDLLALHREVLRLRPQARLLMVGGYEPGSRYFRMLQREARGLRGVSFLGRLSHAQ LVAAYRSASVFVSMSEHEGFGVPLIEAMAAEVPVLAYAAAAVPETLGGAGVAFDQKRFAFLAELAVDLSEDVSLRGPVIA GQARRLEHFSAPSVQTAFTKALETVLPRPTPTKSRKVPERPRVAMVVQRYGEVTGGAEKLAAQMAEHLAPHWDLTLLTTC AKNHLVWDNAFPPGPDVVDGIKVLRFPSTRVRNIRGFNGLSRQVFDKSNERLREEQWVAEQGPMCPGLLHHLATERDAYD GYLFFTYLYAPTVWGLPLVADRSLLVPTTHDEAPVRFGVYRDVFERPRALLCLTPEEHTLIEKYFPNHAPTRVVGVGVDR PRADGARFKEKHGIHRHYLLYIGRQEPGKGVPELLEYHQALKNRFEDAPDLVLAGDTNMELSGEGVRYLGRIDEQDKHDA LAGALAVVVPSRYESLSLLTLESFAQGTPVLVNGRSDVLVGQVERSGAGRAYTDLESFIQGLREVGSEREPMGKRGLAYV KKQGWPQVVAAYREEMQRILEEKRR
Specific function: Catalyzes the addition of a mannose residue from GDP-D- mannose to the position 6 of a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1) to generate phosphatidyl-myo-inositol bearing alpha-1,2- and alpha-1,6-linked mannose resid
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 [H]
Pfam domain/function: PF00534 Glycos_transf_1 [H]
EC number: =2.4.1.57 [H]
Molecular weight: Translated: 82310; Mature: 82178
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIHQLIPSFVPGDATGQAALHLQLLLRRMGHAGALYADEVGPGLEGLASPASALRPEPG CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHCCCCHHHHCCCHHHHCCCCC DLVLYHHGIASPLSSRLMHLPCRRGIVFHNISPARFYEGLPLADALVAGRAQLAAMAPFA CEEEEECCCCCHHHHHHHHCHHHCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHCCHH DVAIGVSDFNAAELRVAGYRNVHTVPLFIEPERFSRASADAKMLQRLEGPGPVLLGVSRV HHEECCCCCCCCEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECHHHH MPHKRFEDLLALHREVLRLRPQARLLMVGGYEPGSRYFRMLQREARGLRGVSFLGRLSHA CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH QLVAAYRSASVFVSMSEHEGFGVPLIEAMAAEVPVLAYAAAAVPETLGGAGVAFDQKRFA HHHHHHHCCEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECHHHHH FLAELAVDLSEDVSLRGPVIAGQARRLEHFSAPSVQTAFTKALETVLPRPTPTKSRKVPE HHHHHHHHHHCCCCCCCCEECCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC RPRVAMVVQRYGEVTGGAEKLAAQMAEHLAPHWDLTLLTTCAKNHLVWDNAFPPGPDVVD CCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCCCCCCCCHHH GIKVLRFPSTRVRNIRGFNGLSRQVFDKSNERLREEQWVAEQGPMCPGLLHHLATERDAY HHHHHCCCCHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC DGYLFFTYLYAPTVWGLPLVADRSLLVPTTHDEAPVRFGVYRDVFERPRALLCLTPEEHT CCEEHHHHHHHHHHCCCCEECCCCEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHH LIEKYFPNHAPTRVVGVGVDRPRADGARFKEKHGIHRHYLLYIGRQEPGKGVPELLEYHQ HHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHH ALKNRFEDAPDLVLAGDTNMELSGEGVRYLGRIDEQDKHDALAGALAVVVPSRYESLSLL HHHHHCCCCCCEEEECCCCCEECCCCHHHHHCCCCCHHHHHHHHHHHHEECCCCCCEEEE TLESFAQGTPVLVNGRSDVLVGQVERSGAGRAYTDLESFIQGLREVGSEREPMGKRGLAY EHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH VKKQGWPQVVAAYREEMQRILEEKRR HHHCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AIHQLIPSFVPGDATGQAALHLQLLLRRMGHAGALYADEVGPGLEGLASPASALRPEPG CHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHCCCCHHHHCCCHHHHCCCCC DLVLYHHGIASPLSSRLMHLPCRRGIVFHNISPARFYEGLPLADALVAGRAQLAAMAPFA CEEEEECCCCCHHHHHHHHCHHHCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHCCHH DVAIGVSDFNAAELRVAGYRNVHTVPLFIEPERFSRASADAKMLQRLEGPGPVLLGVSRV HHEECCCCCCCCEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECHHHH MPHKRFEDLLALHREVLRLRPQARLLMVGGYEPGSRYFRMLQREARGLRGVSFLGRLSHA CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH QLVAAYRSASVFVSMSEHEGFGVPLIEAMAAEVPVLAYAAAAVPETLGGAGVAFDQKRFA HHHHHHHCCEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECHHHHH FLAELAVDLSEDVSLRGPVIAGQARRLEHFSAPSVQTAFTKALETVLPRPTPTKSRKVPE HHHHHHHHHHCCCCCCCCEECCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC RPRVAMVVQRYGEVTGGAEKLAAQMAEHLAPHWDLTLLTTCAKNHLVWDNAFPPGPDVVD CCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCCCCCCCCHHH GIKVLRFPSTRVRNIRGFNGLSRQVFDKSNERLREEQWVAEQGPMCPGLLHHLATERDAY HHHHHCCCCHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC DGYLFFTYLYAPTVWGLPLVADRSLLVPTTHDEAPVRFGVYRDVFERPRALLCLTPEEHT CCEEHHHHHHHHHHCCCCEECCCCEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHH LIEKYFPNHAPTRVVGVGVDRPRADGARFKEKHGIHRHYLLYIGRQEPGKGVPELLEYHQ HHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHH ALKNRFEDAPDLVLAGDTNMELSGEGVRYLGRIDEQDKHDALAGALAVVVPSRYESLSLL HHHHHCCCCCCEEEECCCCCEECCCCHHHHHCCCCCHHHHHHHHHHHHEECCCCCCEEEE TLESFAQGTPVLVNGRSDVLVGQVERSGAGRAYTDLESFIQGLREVGSEREPMGKRGLAY EHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH VKKQGWPQVVAAYREEMQRILEEKRR HHHCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12948626 [H]