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The map label for this gene is rpoE [H]

Identifier: 108762144

GI number: 108762144

Start: 2909623

End: 2910126

Strand: Reverse

Name: rpoE [H]

Synonym: MXAN_2500

Alternate gene names: 108762144

Gene position: 2910126-2909623 (Counterclockwise)

Preceding gene: 108761339

Following gene: 108757705

Centisome position: 31.84

GC content: 70.24

Gene sequence:

>504_bases
ATGCACGCATGCGCGCTTCCGCCGCTGTCCGAGTTGTATACCGAGCACCGCCCTCGCGCGTTGGCCATTGCCCGACGCAT
CGTCGGTGATACCGCCGACGCTGAAGACGTGGTGCAGGACGTCTTCGCCCGGCTCGCTCGCCGCGCCCCCGGCTACGGCG
GCCGCGCGGCGTGGAGCACCTGGCTGCACCGGGTCATGGTGAACAGCAGCATCAACTGGCTGCGGGCGCGCAAGCGCCGA
GACAGGCTGAGCCACGACGTCCAGGAGCCCCTGTCCCCCGAAGCCCTCGCCGTGGGCGCGGAGATGGAGCGCCACTTCGG
TGAGGCGATGGAGGACATCAACGAGCAGCAGCGCCAGGTGCTCTACCTGCGCGAGGTGCGCGGCCTGAGCTACCCGGAAA
TCGCCCGGCTGCTGCGCATCCCCGAAGGCACGGTGAAGAGCACGCTCCACCGCGCCCGCCAGCGCACGCTCTCCCTGATG
GAAGAGCGCGGCCAGCAGCCCTGA

Upstream 100 bases:

>100_bases
GGCCCACGGTGCATGGCCCTGAAGGGCGATAGACCCTTCAGGCAGCTCATTCGTTCCATGTCCTGTACGTCCACCCCGGC
GTGTCAGGAGAGCACCCGTC

Downstream 100 bases:

>100_bases
GGGCCAGGGACGGGCTCAGTCCTCGCTCTTCGAGCCGACGAACTGGTCCGCCTTCTCCTTGAAGAGGACGTTGAAGCTGG
TGAGCGAGCCGTAGACGCGG

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MHACALPPLSELYTEHRPRALAIARRIVGDTADAEDVVQDVFARLARRAPGYGGRAAWSTWLHRVMVNSSINWLRARKRR
DRLSHDVQEPLSPEALAVGAEMERHFGEAMEDINEQQRQVLYLREVRGLSYPEIARLLRIPEGTVKSTLHRARQRTLSLM
EERGQQP

Sequences:

>Translated_167_residues
MHACALPPLSELYTEHRPRALAIARRIVGDTADAEDVVQDVFARLARRAPGYGGRAAWSTWLHRVMVNSSINWLRARKRR
DRLSHDVQEPLSPEALAVGAEMERHFGEAMEDINEQQRQVLYLREVRGLSYPEIARLLRIPEGTVKSTLHRARQRTLSLM
EERGQQP
>Mature_167_residues
MHACALPPLSELYTEHRPRALAIARRIVGDTADAEDVVQDVFARLARRAPGYGGRAAWSTWLHRVMVNSSINWLRARKRR
DRLSHDVQEPLSPEALAVGAEMERHFGEAMEDINEQQRQVLYLREVRGLSYPEIARLLRIPEGTVKSTLHRARQRTLSLM
EERGQQP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=138, Percent_Identity=35.5072463768116, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19155; Mature: 19155

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHACALPPLSELYTEHRPRALAIARRIVGDTADAEDVVQDVFARLARRAPGYGGRAAWST
CCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
WLHRVMVNSSINWLRARKRRDRLSHDVQEPLSPEALAVGAEMERHFGEAMEDINEQQRQV
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYLREVRGLSYPEIARLLRIPEGTVKSTLHRARQRTLSLMEERGQQP
HHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHACALPPLSELYTEHRPRALAIARRIVGDTADAEDVVQDVFARLARRAPGYGGRAAWST
CCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
WLHRVMVNSSINWLRARKRRDRLSHDVQEPLSPEALAVGAEMERHFGEAMEDINEQQRQV
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYLREVRGLSYPEIARLLRIPEGTVKSTLHRARQRTLSLMEERGQQP
HHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]