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The map label for this gene is virS [H]

Identifier: 108762099

GI number: 108762099

Start: 3678285

End: 3679430

Strand: Direct

Name: virS [H]

Synonym: MXAN_3142

Alternate gene names: 108762099

Gene position: 3678285-3679430 (Clockwise)

Preceding gene: 108758226

Following gene: 108760800

Centisome position: 40.24

GC content: 72.16

Gene sequence:

>1146_bases
GTGTCGTCCATGGTCCAAGCGTGCAGGCCCCCCGCCGCCCGCGCACTGACGGATGGCGACAGAACGGCTTGCTGGCCGCG
CCAACGCGCCATTAGCGTCCCGTTCGTGGCGCAGCCGCCTCTGTCTTCATCCTCCGAGCCATCCTTGTCCGCGCGAATGG
CGCGGCAGGCGCTCCGGCTCGCGGCGACGCTGGGACTGCCGGTGGAGGCGCTCTGCCGGGAGGCGGGCTTCCGGATGGAG
GACCTGGACGACCCGGAGCTGCGAATCCCCTACGCCGCGTTGGACGGCCTCCTGGAGCGGGCGGCGGAGCTGTCCGGGGA
CGCCAACCTGGGGCTGCACATCGCCCGCGTGGACGTGGTGGACCTGGATGACCCGGCCACCTTCGTCGTCCTCACCTGCG
CGACGCTGCGGGAAGCCATGGAGCGGGGCTGCCGCTACCAGCGCGTCTGGGGAGACGGAGAGCGCTTCCTGATGGAGGAG
ACGGAGCGCGGCGTGCGCATGCGCTTCACACCCGTGGGCGCGCCCCGGCCCGCACACCGGCACCTGGTGGACGCGGCGCT
GGTGCAGTTCGCCACCGGAGTAAGGGCCTTCACGGGCGTGGACGTCCGGCCGCTCGTCGTGCGCTTCACCCACACCGCGC
CCGCGGACCTCCGCGAGCACGAGGCGCTCTTCGGGTGTCCCTTGGAGTTCGGCGCTCCCTTCAACGCCATCGAGTTCTCC
CACGAGGACGCCCAGCGGCCCTTCATCCACGGGAACGCGCTGCTCAACGCCATGTTCCAACGGCAGGCCCAGCGCGCGTT
GGAGCGGCTGCCGGACGTGTCCACGACCACCGAGCGCGTCCGGCAACAGGTCCGGCGCGAGCTGGCCGGCGGGGACTTCT
CCTTCGTGGCCGTTGCCCGGGCCCTGCGGCAGCCGCCGCGGACGCTCCAGCGGCGGCTCGCGGGCGAGGGGCAGAGCTAT
GCGGCCATCGTCGAAGCCCTGCGCCGAGAGCTTTCCGAGTCCTACCTCCAGCGCCGCATGTCCATCGCCGAGGTGTCCTT
CCTCCTCGGCTATGCGGACCCGGTGGCCTTCCACCGCGCCTTCAAGCGCTGGTGGGGGGTGAGCCCGGAGGGCTTCCGGA
GGGAGCGGCTCCAGGCCCCACGCTGA

Upstream 100 bases:

>100_bases
GATGGTGTGGAGGTAGTCGGTCACCAAGTCTCTCAGCGCGTCGGGGACCCAGGTCTGGTCCGTGAACTCGAAGAGGTGCA
GCCGGGGGAGCAGCGAAGGT

Downstream 100 bases:

>100_bases
GCCTGGACCGCTGTCCATCCGAGCGGCGTCTCAGGCCGCCTCGCGCCCGCCCTCCGCCGCCGCGCGCGCCAGCCGCTTCT
GGATGGCGAGGAACAGCGCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSSMVQACRPPAARALTDGDRTACWPRQRAISVPFVAQPPLSSSSEPSLSARMARQALRLAATLGLPVEALCREAGFRME
DLDDPELRIPYAALDGLLERAAELSGDANLGLHIARVDVVDLDDPATFVVLTCATLREAMERGCRYQRVWGDGERFLMEE
TERGVRMRFTPVGAPRPAHRHLVDAALVQFATGVRAFTGVDVRPLVVRFTHTAPADLREHEALFGCPLEFGAPFNAIEFS
HEDAQRPFIHGNALLNAMFQRQAQRALERLPDVSTTTERVRQQVRRELAGGDFSFVAVARALRQPPRTLQRRLAGEGQSY
AAIVEALRRELSESYLQRRMSIAEVSFLLGYADPVAFHRAFKRWWGVSPEGFRRERLQAPR

Sequences:

>Translated_381_residues
MSSMVQACRPPAARALTDGDRTACWPRQRAISVPFVAQPPLSSSSEPSLSARMARQALRLAATLGLPVEALCREAGFRME
DLDDPELRIPYAALDGLLERAAELSGDANLGLHIARVDVVDLDDPATFVVLTCATLREAMERGCRYQRVWGDGERFLMEE
TERGVRMRFTPVGAPRPAHRHLVDAALVQFATGVRAFTGVDVRPLVVRFTHTAPADLREHEALFGCPLEFGAPFNAIEFS
HEDAQRPFIHGNALLNAMFQRQAQRALERLPDVSTTTERVRQQVRRELAGGDFSFVAVARALRQPPRTLQRRLAGEGQSY
AAIVEALRRELSESYLQRRMSIAEVSFLLGYADPVAFHRAFKRWWGVSPEGFRRERLQAPR
>Mature_380_residues
SSMVQACRPPAARALTDGDRTACWPRQRAISVPFVAQPPLSSSSEPSLSARMARQALRLAATLGLPVEALCREAGFRMED
LDDPELRIPYAALDGLLERAAELSGDANLGLHIARVDVVDLDDPATFVVLTCATLREAMERGCRYQRVWGDGERFLMEET
ERGVRMRFTPVGAPRPAHRHLVDAALVQFATGVRAFTGVDVRPLVVRFTHTAPADLREHEALFGCPLEFGAPFNAIEFSH
EDAQRPFIHGNALLNAMFQRQAQRALERLPDVSTTTERVRQQVRRELAGGDFSFVAVARALRQPPRTLQRRLAGEGQSYA
AIVEALRRELSESYLQRRMSIAEVSFLLGYADPVAFHRAFKRWWGVSPEGFRRERLQAPR

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 42596; Mature: 42465

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSMVQACRPPAARALTDGDRTACWPRQRAISVPFVAQPPLSSSSEPSLSARMARQALRL
CCCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
AATLGLPVEALCREAGFRMEDLDDPELRIPYAALDGLLERAAELSGDANLGLHIARVDVV
HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
DLDDPATFVVLTCATLREAMERGCRYQRVWGDGERFLMEETERGVRMRFTPVGAPRPAHR
ECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCEEEEEECCCCCHHHH
HLVDAALVQFATGVRAFTGVDVRPLVVRFTHTAPADLREHEALFGCPLEFGAPFNAIEFS
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCHHHCCCCCCEECC
HEDAQRPFIHGNALLNAMFQRQAQRALERLPDVSTTTERVRQQVRRELAGGDFSFVAVAR
CHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
ALRQPPRTLQRRLAGEGQSYAAIVEALRRELSESYLQRRMSIAEVSFLLGYADPVAFHRA
HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FKRWWGVSPEGFRRERLQAPR
HHHHCCCCCCHHHHHHCCCCC
>Mature Secondary Structure 
SSMVQACRPPAARALTDGDRTACWPRQRAISVPFVAQPPLSSSSEPSLSARMARQALRL
CCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
AATLGLPVEALCREAGFRMEDLDDPELRIPYAALDGLLERAAELSGDANLGLHIARVDVV
HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
DLDDPATFVVLTCATLREAMERGCRYQRVWGDGERFLMEETERGVRMRFTPVGAPRPAHR
ECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCEEEEEECCCCCHHHH
HLVDAALVQFATGVRAFTGVDVRPLVVRFTHTAPADLREHEALFGCPLEFGAPFNAIEFS
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCHHHCCCCCCEECC
HEDAQRPFIHGNALLNAMFQRQAQRALERLPDVSTTTERVRQQVRRELAGGDFSFVAVAR
CHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
ALRQPPRTLQRRLAGEGQSYAAIVEALRRELSESYLQRRMSIAEVSFLLGYADPVAFHRA
HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FKRWWGVSPEGFRRERLQAPR
HHHHCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]