| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is 108762092
Identifier: 108762092
GI number: 108762092
Start: 3900689
End: 3903154
Strand: Reverse
Name: 108762092
Synonym: MXAN_3356
Alternate gene names: NA
Gene position: 3903154-3900689 (Counterclockwise)
Preceding gene: 108760621
Following gene: 108763832
Centisome position: 42.71
GC content: 69.06
Gene sequence:
>2466_bases TTGGCCCACGGTTCGCCGCCGATCTCCGAGGATCGCGTCCCGGTCGCGCAGACACTCGCGACAGTCGCCCATACCCCGTA CGTCCCCCCCGACAAGTCTCCGGCGGAGATGACGATGCGAGCCCTGGTGCTCGGCTCGGTGTTGGGCATCGTGTTCGCCG CCTCGTCCGTGTACCTGGCCATCAAGGTGGGCCTCACGGTCTCCGCGTCCATTCCCGTCGCGGTGCTCTCCATCGCCATC TTCCGGGCCCTGGGCAACTCCAGCATCCTGGAGAACACCATCGTCCAGACGACGGGCTCGGCCGGTGAGTCGCTCGCCTT CGGTGTGGCCGCCGCGCTCCCCGCCCTGCTGCTCCTGGGCTACGACATCAGCCTCACCCACGCCTTCCTCACGGCGGCGC TGGGCGGCGTACTCGGCGTGCTGATGATGATTCCGCTGCGCCAGGGCCTCATCGTCCAGGAGCACGGCAGGCTGCCCTAC CCGGAGGGCACCGCCAGCGCGGACGTGCTCATCGTCGGCGAGCAGGGCGGCACCAACGCCCGCACCGTCATCACCGGCTT CATCGTGGGCGGTGTCTACAAGCTCGCCTACTCCGGCATGAAGCTGTTCCGCGAGGTCCTGAGCACGCCGCTGCAGGGGC TCAAGAGCGCGACCGTCTCCACCGAGGTGAGCCCGGAGCTGCTGGGCGTGGGCTACATCATCGGCCCCCGCGTGGCGGCC ATCACCTTCGCCGGTGGTGTGCTGAGCTACCTCATCCTCATCCCGGCCATCTCGTTCTTCGGCAGCGGGCTGGAGACGCC GCTGCTGATGCACAACGGCCAGCTCATCCGGGACATGTCGCCGGACCAGATTCGCAATGCGTACGTGCTCTACATCGGCG CGGGCGCCGTGGCGACGGGCGGTCTCATCAGCCTCATCCGCTCGCTGCCCACCATCGTCGGGGCCTTCAAGCGCAGCCTG GAGACGCTGAAGGCGTCGCGGGGCCAGGGCGCCATGCCGCAGCTGCTGCGCACGGAGCAGGACCTGCCCATCACCGTGGT GCTGGGAGGCAGCGCGCTGCTGGTGCTGGCCATCTGGCTGGCGCCGCCGCTGGAGGTGAACCTCATCTCCGCCATCCTCA TCGTCATCTTCGGCTTCTTCTTCGTCACGGTGAGCGCGCGCATCACCGGTGAGATTGGCAGTTCGTCCAACCCCATCTCC GGCATGGTGGTGGCCACGCTGCTCATCACCTGCCTCGTGTACCTGCTCATGGGCTGGACGTCGTCCGAGGACCGCTTCAT GGCCCTCACCACGGCGGCCATCGTCGGCATCGCCGCGTCCAACGGCGGCACCACCGCGCAGGACCTCAAGACGGCCTTCC TGGTGGGCGGTACGCCCCGGCGCCAGCAGTTGGCGCTGTTCGTCGGTGTGCTCACCAGCGCGATGTTCATCGGCCTGGTG CTGGTGACGCTCAACCGCGGCGCCACCGTCACCATCCCCGAGCCCCACCCGGGCGTGAAGGTGACGGAGTTCTCCAACGA GACGCGCGTCCAGCACACCTTCTCCTGGGCCGTCTCCGCCGACGCGCTGGCGGCCCGCGGCCTGGACGAGGCGGCGCTGC GCAAGGCCGTCTGGGCGCAGGGCTACGAGCTGAACACGCAGAGCGGCGCGATGGAGCTGCGCAGCTGGCGCGACGTGTCC TCGCAGGACCTGGGCGCGGTGACGCTCAACGTCTCCAGCGGCGCCCCCATCAAGGTGGCGGACCTGGGCGCCGTCACGGA CGGCCCGAAGCGCACCTACAAGGAAGGCTACGTGCGCGGCGCGGACACGCCGGTGCCCGCGGGCAAGTACCTGCTCGATG AGTCCGACACCATCCAGTACGTGGTGGACCCGGGCATCGGCGGCCGCATCAGCGTCTATGAAGGCCAGCAACTGACGCGC TACGCGGCGCCCAAGGCGCAGCTGTTCTCTCTCATCATCGACGGCATCCTCACCCAGAAGCTGCCGTGGGACCTGGTGCT CCTGGGCGTGTTCATCGCGCTGATGCTGGAGCTGTGCGGCGTGTCCTCCCTGCCCTTCGCGGTGGGCGTGTACCTGCCCA TCAGCAGCAGCGCGCCGCTCTTCGTGGGCGGCATGGTGCGCTACTTCGTGGACCGCATCCGCGGCGGCGAGTCCGACTTC TCGCCGGGCACGCTGCTCTCCTCCGGTTTCATCGCCGGTGGCTCCATCGCGGGCGTGCTCATCGCCTTCCTGGAAATCGC CACCGACGGAGCAGGCACCCGCGCGCTGAACCTGCCTGCCCTGCTGGGCAACCAGGGCGGCCTGGGCGGCTTCCTCAACA TGGTGGGCGAGAGCGAGCACGCCCACCCGCTGTGGTCCAACCTCTGGGGCCTGCTCTTCTTCGCCGGCCTGACGCTGTTC CTGCTGCGCTCCGCCCTCAAGGGCCAGAGCGCCGCCATGTCACCGCCGCCGCAGAAGGAGGCGTAG
Upstream 100 bases:
>100_bases CGCCCTACTGGCAGGGGCGCTTGTCATTTGAGGGCGTTGTTTCACCGCCAGCCGGGGGCCTGCTAGAAAGGGCCGGTTTC CCTTTGAAGGAGCCCCCCGC
Downstream 100 bases:
>100_bases GCCACGTGCCCGGGCCTCCTCCTGGGGGCCGGGTGAAACACCGCTGAGACACCCGGGGCGGCGAGGAGCAATCCTCGCCG CCTCGCTCATTTCCAGAGCG
Product: OPT family oligopeptide transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 821; Mature: 820
Protein sequence:
>821_residues MAHGSPPISEDRVPVAQTLATVAHTPYVPPDKSPAEMTMRALVLGSVLGIVFAASSVYLAIKVGLTVSASIPVAVLSIAI FRALGNSSILENTIVQTTGSAGESLAFGVAAALPALLLLGYDISLTHAFLTAALGGVLGVLMMIPLRQGLIVQEHGRLPY PEGTASADVLIVGEQGGTNARTVITGFIVGGVYKLAYSGMKLFREVLSTPLQGLKSATVSTEVSPELLGVGYIIGPRVAA ITFAGGVLSYLILIPAISFFGSGLETPLLMHNGQLIRDMSPDQIRNAYVLYIGAGAVATGGLISLIRSLPTIVGAFKRSL ETLKASRGQGAMPQLLRTEQDLPITVVLGGSALLVLAIWLAPPLEVNLISAILIVIFGFFFVTVSARITGEIGSSSNPIS GMVVATLLITCLVYLLMGWTSSEDRFMALTTAAIVGIAASNGGTTAQDLKTAFLVGGTPRRQQLALFVGVLTSAMFIGLV LVTLNRGATVTIPEPHPGVKVTEFSNETRVQHTFSWAVSADALAARGLDEAALRKAVWAQGYELNTQSGAMELRSWRDVS SQDLGAVTLNVSSGAPIKVADLGAVTDGPKRTYKEGYVRGADTPVPAGKYLLDESDTIQYVVDPGIGGRISVYEGQQLTR YAAPKAQLFSLIIDGILTQKLPWDLVLLGVFIALMLELCGVSSLPFAVGVYLPISSSAPLFVGGMVRYFVDRIRGGESDF SPGTLLSSGFIAGGSIAGVLIAFLEIATDGAGTRALNLPALLGNQGGLGGFLNMVGESEHAHPLWSNLWGLLFFAGLTLF LLRSALKGQSAAMSPPPQKEA
Sequences:
>Translated_821_residues MAHGSPPISEDRVPVAQTLATVAHTPYVPPDKSPAEMTMRALVLGSVLGIVFAASSVYLAIKVGLTVSASIPVAVLSIAI FRALGNSSILENTIVQTTGSAGESLAFGVAAALPALLLLGYDISLTHAFLTAALGGVLGVLMMIPLRQGLIVQEHGRLPY PEGTASADVLIVGEQGGTNARTVITGFIVGGVYKLAYSGMKLFREVLSTPLQGLKSATVSTEVSPELLGVGYIIGPRVAA ITFAGGVLSYLILIPAISFFGSGLETPLLMHNGQLIRDMSPDQIRNAYVLYIGAGAVATGGLISLIRSLPTIVGAFKRSL ETLKASRGQGAMPQLLRTEQDLPITVVLGGSALLVLAIWLAPPLEVNLISAILIVIFGFFFVTVSARITGEIGSSSNPIS GMVVATLLITCLVYLLMGWTSSEDRFMALTTAAIVGIAASNGGTTAQDLKTAFLVGGTPRRQQLALFVGVLTSAMFIGLV LVTLNRGATVTIPEPHPGVKVTEFSNETRVQHTFSWAVSADALAARGLDEAALRKAVWAQGYELNTQSGAMELRSWRDVS SQDLGAVTLNVSSGAPIKVADLGAVTDGPKRTYKEGYVRGADTPVPAGKYLLDESDTIQYVVDPGIGGRISVYEGQQLTR YAAPKAQLFSLIIDGILTQKLPWDLVLLGVFIALMLELCGVSSLPFAVGVYLPISSSAPLFVGGMVRYFVDRIRGGESDF SPGTLLSSGFIAGGSIAGVLIAFLEIATDGAGTRALNLPALLGNQGGLGGFLNMVGESEHAHPLWSNLWGLLFFAGLTLF LLRSALKGQSAAMSPPPQKEA >Mature_820_residues AHGSPPISEDRVPVAQTLATVAHTPYVPPDKSPAEMTMRALVLGSVLGIVFAASSVYLAIKVGLTVSASIPVAVLSIAIF RALGNSSILENTIVQTTGSAGESLAFGVAAALPALLLLGYDISLTHAFLTAALGGVLGVLMMIPLRQGLIVQEHGRLPYP EGTASADVLIVGEQGGTNARTVITGFIVGGVYKLAYSGMKLFREVLSTPLQGLKSATVSTEVSPELLGVGYIIGPRVAAI TFAGGVLSYLILIPAISFFGSGLETPLLMHNGQLIRDMSPDQIRNAYVLYIGAGAVATGGLISLIRSLPTIVGAFKRSLE TLKASRGQGAMPQLLRTEQDLPITVVLGGSALLVLAIWLAPPLEVNLISAILIVIFGFFFVTVSARITGEIGSSSNPISG MVVATLLITCLVYLLMGWTSSEDRFMALTTAAIVGIAASNGGTTAQDLKTAFLVGGTPRRQQLALFVGVLTSAMFIGLVL VTLNRGATVTIPEPHPGVKVTEFSNETRVQHTFSWAVSADALAARGLDEAALRKAVWAQGYELNTQSGAMELRSWRDVSS QDLGAVTLNVSSGAPIKVADLGAVTDGPKRTYKEGYVRGADTPVPAGKYLLDESDTIQYVVDPGIGGRISVYEGQQLTRY AAPKAQLFSLIIDGILTQKLPWDLVLLGVFIALMLELCGVSSLPFAVGVYLPISSSAPLFVGGMVRYFVDRIRGGESDFS PGTLLSSGFIAGGSIAGVLIAFLEIATDGAGTRALNLPALLGNQGGLGGFLNMVGESEHAHPLWSNLWGLLFFAGLTLFL LRSALKGQSAAMSPPPQKEA
Specific function: Unknown
COG id: COG1297
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oligopeptide OPT transporter family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004814 - InterPro: IPR004813 [H]
Pfam domain/function: PF03169 OPT [H]
EC number: NA
Molecular weight: Translated: 85743; Mature: 85612
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHGSPPISEDRVPVAQTLATVAHTPYVPPDKSPAEMTMRALVLGSVLGIVFAASSVYLA CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEE IKVGLTVSASIPVAVLSIAIFRALGNSSILENTIVQTTGSAGESLAFGVAAALPALLLLG EEECEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC YDISLTHAFLTAALGGVLGVLMMIPLRQGLIVQEHGRLPYPEGTASADVLIVGEQGGTNA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCH RTVITGFIVGGVYKLAYSGMKLFREVLSTPLQGLKSATVSTEVSPELLGVGYIIGPRVAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEECEECCCCHHH ITFAGGVLSYLILIPAISFFGSGLETPLLMHNGQLIRDMSPDQIRNAYVLYIGAGAVATG HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCHHHHCCEEEEEEECCHHHHH GLISLIRSLPTIVGAFKRSLETLKASRGQGAMPQLLRTEQDLPITVVLGGSALLVLAIWL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH APPLEVNLISAILIVIFGFFFVTVSARITGEIGSSSNPISGMVVATLLITCLVYLLMGWT CCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC SSEDRFMALTTAAIVGIAASNGGTTAQDLKTAFLVGGTPRRQQLALFVGVLTSAMFIGLV CCCCCEEHEEHHHHHEEEECCCCCCHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHH LVTLNRGATVTIPEPHPGVKVTEFSNETRVQHTFSWAVSADALAARGLDEAALRKAVWAQ HHEECCCCEEECCCCCCCCEEEECCCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHC GYELNTQSGAMELRSWRDVSSQDLGAVTLNVSSGAPIKVADLGAVTDGPKRTYKEGYVRG CCEECCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHCCCCC ADTPVPAGKYLLDESDTIQYVVDPGIGGRISVYEGQQLTRYAAPKAQLFSLIIDGILTQK CCCCCCCCCEEECCCCCEEEEECCCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHCC LPWDLVLLGVFIALMLELCGVSSLPFAVGVYLPISSSAPLFVGGMVRYFVDRIRGGESDF CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC SPGTLLSSGFIAGGSIAGVLIAFLEIATDGAGTRALNLPALLGNQGGLGGFLNMVGESEH CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCCCCHHHHHHCCCCC AHPLWSNLWGLLFFAGLTLFLLRSALKGQSAAMSPPPQKEA CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure AHGSPPISEDRVPVAQTLATVAHTPYVPPDKSPAEMTMRALVLGSVLGIVFAASSVYLA CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEE IKVGLTVSASIPVAVLSIAIFRALGNSSILENTIVQTTGSAGESLAFGVAAALPALLLLG EEECEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC YDISLTHAFLTAALGGVLGVLMMIPLRQGLIVQEHGRLPYPEGTASADVLIVGEQGGTNA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCH RTVITGFIVGGVYKLAYSGMKLFREVLSTPLQGLKSATVSTEVSPELLGVGYIIGPRVAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEECEECCCCHHH ITFAGGVLSYLILIPAISFFGSGLETPLLMHNGQLIRDMSPDQIRNAYVLYIGAGAVATG HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCHHHHCCEEEEEEECCHHHHH GLISLIRSLPTIVGAFKRSLETLKASRGQGAMPQLLRTEQDLPITVVLGGSALLVLAIWL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH APPLEVNLISAILIVIFGFFFVTVSARITGEIGSSSNPISGMVVATLLITCLVYLLMGWT CCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC SSEDRFMALTTAAIVGIAASNGGTTAQDLKTAFLVGGTPRRQQLALFVGVLTSAMFIGLV CCCCCEEHEEHHHHHEEEECCCCCCHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHH LVTLNRGATVTIPEPHPGVKVTEFSNETRVQHTFSWAVSADALAARGLDEAALRKAVWAQ HHEECCCCEEECCCCCCCCEEEECCCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHC GYELNTQSGAMELRSWRDVSSQDLGAVTLNVSSGAPIKVADLGAVTDGPKRTYKEGYVRG CCEECCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHCCCCC ADTPVPAGKYLLDESDTIQYVVDPGIGGRISVYEGQQLTRYAAPKAQLFSLIIDGILTQK CCCCCCCCCEEECCCCCEEEEECCCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHCC LPWDLVLLGVFIALMLELCGVSSLPFAVGVYLPISSSAPLFVGGMVRYFVDRIRGGESDF CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC SPGTLLSSGFIAGGSIAGVLIAFLEIATDGAGTRALNLPALLGNQGGLGGFLNMVGESEH CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCCCCHHHHHHCCCCC AHPLWSNLWGLLFFAGLTLFLLRSALKGQSAAMSPPPQKEA CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]