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The map label for this gene is ywbI [H]

Identifier: 108762075

GI number: 108762075

Start: 1849622

End: 1850557

Strand: Reverse

Name: ywbI [H]

Synonym: MXAN_1575

Alternate gene names: 108762075

Gene position: 1850557-1849622 (Counterclockwise)

Preceding gene: 108762731

Following gene: 108759042

Centisome position: 20.25

GC content: 72.65

Gene sequence:

>936_bases
ATGACCTCCGAACAGCTCCGAGCCTTCCTCGAAGTCGCCCGGGCGGGACGCCTGGCCACCGCCGCGCGTGGGCTGGGTCT
GTCCCAGTCCGGCCTCTCCCGGCAGCTCCAATCACTCGAGGCCGCCCTGGGCACGCGCTTGCTCGTCCGCACGCCAGGGG
GCACGGTGCTGACAGACGCGGGAGAGCGCTTCCTGCCTCATGCCCAGCGCGCCCTGGACGCACTGACGGCGGGCACCTCG
GAGCTGGAGCGGCTGTCGGGGACGCCACACGGCGTGGTGTCGCTCGGCACGCTGCATACCGTGGGGGCGTACCTGCTGCC
GGACATCATCCCGGCCTTCGCGCGCCAGTTCCCGGAGGTCCGGCCTCGGCTGAGCGAGGGACTGGCACCGGCCATGGAGG
AAGGCGTGGCACGCGGCGCCCTGGACCTGGCCATCCTCTCCCTCCCCGTGCGGCGCGCGGACCTGGTGGCGCAGCGACTG
TGGGAGGAGTCCCTGGTGCTCGCCGTCCCGCGTGGACACCGGCTGACGAAGTCAGGCAAGCCCGTGACGATGGACGAGGC
CGTGGAAGAGCCCTGGGTCGTCATCCCCGGCATGAGCGGCACCCGAGCGATGGAGGCCGCCTGTGAGGCGCGGGGCGTGA
CACCCCGCCTGGCGGTGGAGACGGACAACGCGGAGGCCATGCGCCGCATGGTGGAGCGCGGCCTGGGCGTGGCGATGGTG
CCGCAGTTGATGGCCCGAGACCACCATGCCCAGGGCTTCGATGTGGTGCCCCTGGCGCGCGCCGGGGTGAAGCGGCAGGT
GGCGCTGATACACCGGGGAGAGGGCTACCTCACGGCCGCGGCGCGGGCGCTCAAGTCCTTCATCGTGGAGAGCGTGCGCG
CCATGCCCGAACCCTGGGGCACGAGGAAGGCGGCTCCAGGCGCTCGGGTGCGCTAG

Upstream 100 bases:

>100_bases
GGGCTCCGCTGTGACGCCGCTTCCGTCCATTACCTCTCTGTACGCCCCAGGCCCCCATGCGGAAACCGCATCTTCCGCAT
AGGCTTTTTGCGGAATCCGC

Downstream 100 bases:

>100_bases
CGTGCCGCGGCCGATGGCGCCGTCTTCACGAGGCGAGGCCCATCGGGACACGGAGACGCACGATGGCCCGGACGGACAGC
TTCGTTGAGTACACGGTGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTSEQLRAFLEVARAGRLATAARGLGLSQSGLSRQLQSLEAALGTRLLVRTPGGTVLTDAGERFLPHAQRALDALTAGTS
ELERLSGTPHGVVSLGTLHTVGAYLLPDIIPAFARQFPEVRPRLSEGLAPAMEEGVARGALDLAILSLPVRRADLVAQRL
WEESLVLAVPRGHRLTKSGKPVTMDEAVEEPWVVIPGMSGTRAMEAACEARGVTPRLAVETDNAEAMRRMVERGLGVAMV
PQLMARDHHAQGFDVVPLARAGVKRQVALIHRGEGYLTAAARALKSFIVESVRAMPEPWGTRKAAPGARVR

Sequences:

>Translated_311_residues
MTSEQLRAFLEVARAGRLATAARGLGLSQSGLSRQLQSLEAALGTRLLVRTPGGTVLTDAGERFLPHAQRALDALTAGTS
ELERLSGTPHGVVSLGTLHTVGAYLLPDIIPAFARQFPEVRPRLSEGLAPAMEEGVARGALDLAILSLPVRRADLVAQRL
WEESLVLAVPRGHRLTKSGKPVTMDEAVEEPWVVIPGMSGTRAMEAACEARGVTPRLAVETDNAEAMRRMVERGLGVAMV
PQLMARDHHAQGFDVVPLARAGVKRQVALIHRGEGYLTAAARALKSFIVESVRAMPEPWGTRKAAPGARVR
>Mature_310_residues
TSEQLRAFLEVARAGRLATAARGLGLSQSGLSRQLQSLEAALGTRLLVRTPGGTVLTDAGERFLPHAQRALDALTAGTSE
LERLSGTPHGVVSLGTLHTVGAYLLPDIIPAFARQFPEVRPRLSEGLAPAMEEGVARGALDLAILSLPVRRADLVAQRLW
EESLVLAVPRGHRLTKSGKPVTMDEAVEEPWVVIPGMSGTRAMEAACEARGVTPRLAVETDNAEAMRRMVERGLGVAMVP
QLMARDHHAQGFDVVPLARAGVKRQVALIHRGEGYLTAAARALKSFIVESVRAMPEPWGTRKAAPGARVR

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=29.4736842105263, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787601, Length=272, Percent_Identity=28.3088235294118, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87081904, Length=294, Percent_Identity=30.6122448979592, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=27.4914089347079, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787530, Length=247, Percent_Identity=27.5303643724696, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787806, Length=293, Percent_Identity=27.9863481228669, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788296, Length=246, Percent_Identity=29.2682926829268, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI145693105, Length=286, Percent_Identity=24.8251748251748, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789506, Length=260, Percent_Identity=24.6153846153846, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788748, Length=303, Percent_Identity=27.7227722772277, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786401, Length=304, Percent_Identity=25.6578947368421, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=26.7558528428094, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788887, Length=254, Percent_Identity=28.3464566929134, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790399, Length=273, Percent_Identity=25.6410256410256, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=26.9076305220884, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=259, Percent_Identity=30.1158301158301, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=25.3012048192771, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789204, Length=257, Percent_Identity=28.4046692607004, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=260, Percent_Identity=25, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33277; Mature: 33146

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSEQLRAFLEVARAGRLATAARGLGLSQSGLSRQLQSLEAALGTRLLVRTPGGTVLTDA
CCHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEEECC
GERFLPHAQRALDALTAGTSELERLSGTPHGVVSLGTLHTVGAYLLPDIIPAFARQFPEV
CHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCHHH
RPRLSEGLAPAMEEGVARGALDLAILSLPVRRADLVAQRLWEESLVLAVPRGHRLTKSGK
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCEEEECCCCCEECCCCC
PVTMDEAVEEPWVVIPGMSGTRAMEAACEARGVTPRLAVETDNAEAMRRMVERGLGVAMV
CCCHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHHH
PQLMARDHHAQGFDVVPLARAGVKRQVALIHRGEGYLTAAARALKSFIVESVRAMPEPWG
HHHHHHCCCCCCCCCCHHHHHCHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC
TRKAAPGARVR
CCCCCCCCCCC
>Mature Secondary Structure 
TSEQLRAFLEVARAGRLATAARGLGLSQSGLSRQLQSLEAALGTRLLVRTPGGTVLTDA
CHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEEECC
GERFLPHAQRALDALTAGTSELERLSGTPHGVVSLGTLHTVGAYLLPDIIPAFARQFPEV
CHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCHHH
RPRLSEGLAPAMEEGVARGALDLAILSLPVRRADLVAQRLWEESLVLAVPRGHRLTKSGK
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCEEEECCCCCEECCCCC
PVTMDEAVEEPWVVIPGMSGTRAMEAACEARGVTPRLAVETDNAEAMRRMVERGLGVAMV
CCCHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHHH
PQLMARDHHAQGFDVVPLARAGVKRQVALIHRGEGYLTAAARALKSFIVESVRAMPEPWG
HHHHHHCCCCCCCCCCHHHHHCHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC
TRKAAPGARVR
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]