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The map label for this gene is yhaJ [H]

Identifier: 108762042

GI number: 108762042

Start: 5057131

End: 5058066

Strand: Direct

Name: yhaJ [H]

Synonym: MXAN_4110

Alternate gene names: 108762042

Gene position: 5057131-5058066 (Clockwise)

Preceding gene: 108760151

Following gene: 108761004

Centisome position: 55.33

GC content: 73.4

Gene sequence:

>936_bases
GTGCTCGAAAGCGTCACCATCGACCAGCTCCGCACGCTCCGCGCGGTGGCCGAGGAGGGAAGCTTCTCCGCGGCGGCCCG
GAAGCTCGGCCAGGGGCAGCCCGCCGTCAGTCAAGCCATGCAGCGGCTGGAGAAGCAGCTCGGCCTGCGGCTCTTCGACC
GGAGCGGGCGCGTCCCGCGTCTGACGGCGAAGGGAGAAGCCGTCGTCGCGGCGGCGCAGCGACTCCACGAGGACATCGCC
TCGTTCCAGGCGGTGGTGGGCCGGCTCAAGAGCGGCGAGGAGACGAAGCTGGCGCTGGTGGTGGACGCCATGTTCCCCAC
CGACGCACTGCTGGACTTCGTGCGGGAGCTGGCGCGCACGCACCCGGGTGTGGAGCTGGCGCTGGAGGTGGAGCTGCTGT
CCGCGGTGACGGAGCGCGTGCGCGAGCGGCGCGCGACGCTGGGCATCGCCGGCGCGGACCTGGACCTCACCGGCCTGGAG
CAGCGCCCCATCGCGCTCCTCAAGATGATTCCCGTCGCCGCGCCCTCGCATCCGCTCGCGGCGGTGAAGGGCGTCCTCAC
GGAGGCGCACCTCGCCTCCGCCATCCAAATCGTCCTGAGCGAGCGACTGCCGGAGGGCAAGACGGGCACGGCGGACCGGG
GCGTCATCGGCTCGCGCCTCTGGCGTGTCGCGGACCTGATGACCAAGCACTCACTCCTCGTCGGCGGTATCGGCTGGGGC
CTCGAGCCCGAGCACCTCGTCCGCGACGACCTCGCCGCAGGACGGCTGGTGGCGCTGCGACTGGCGGCCTGGGAGGGGGG
GCCCCCACCCCAGCGCCCGCTCGCCCTGGTGCGCCGCAAGGGCACGCCGCTGGGCCCGGTGGCGACGTGGGCCTCGAACC
GGCTCACCTCGCTGTGCCAGCTCGCGCTCGGGGGCGCGGACCATCACACGACGTGA

Upstream 100 bases:

>100_bases
CCGCGACACTGGCCTCGCCCGTCGTCTCCTGGCTGTCCTCGAAGAAGTAGCGCGAGGGCGCGCGCGTGCATCATCGCCGT
CGATGTGATGCAGTCGCGCG

Downstream 100 bases:

>100_bases
TGAAAAGCATCACGACCTGGAGCGATTTACAGACGGGGCTCGGCTCTTAGGTTTGGAACCATGAGCACCACGACCCAAGT
CAGCGTTCCCACTTCTCCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MLESVTIDQLRTLRAVAEEGSFSAAARKLGQGQPAVSQAMQRLEKQLGLRLFDRSGRVPRLTAKGEAVVAAAQRLHEDIA
SFQAVVGRLKSGEETKLALVVDAMFPTDALLDFVRELARTHPGVELALEVELLSAVTERVRERRATLGIAGADLDLTGLE
QRPIALLKMIPVAAPSHPLAAVKGVLTEAHLASAIQIVLSERLPEGKTGTADRGVIGSRLWRVADLMTKHSLLVGGIGWG
LEPEHLVRDDLAAGRLVALRLAAWEGGPPPQRPLALVRRKGTPLGPVATWASNRLTSLCQLALGGADHHTT

Sequences:

>Translated_311_residues
MLESVTIDQLRTLRAVAEEGSFSAAARKLGQGQPAVSQAMQRLEKQLGLRLFDRSGRVPRLTAKGEAVVAAAQRLHEDIA
SFQAVVGRLKSGEETKLALVVDAMFPTDALLDFVRELARTHPGVELALEVELLSAVTERVRERRATLGIAGADLDLTGLE
QRPIALLKMIPVAAPSHPLAAVKGVLTEAHLASAIQIVLSERLPEGKTGTADRGVIGSRLWRVADLMTKHSLLVGGIGWG
LEPEHLVRDDLAAGRLVALRLAAWEGGPPPQRPLALVRRKGTPLGPVATWASNRLTSLCQLALGGADHHTT
>Mature_311_residues
MLESVTIDQLRTLRAVAEEGSFSAAARKLGQGQPAVSQAMQRLEKQLGLRLFDRSGRVPRLTAKGEAVVAAAQRLHEDIA
SFQAVVGRLKSGEETKLALVVDAMFPTDALLDFVRELARTHPGVELALEVELLSAVTERVRERRATLGIAGADLDLTGLE
QRPIALLKMIPVAAPSHPLAAVKGVLTEAHLASAIQIVLSERLPEGKTGTADRGVIGSRLWRVADLMTKHSLLVGGIGWG
LEPEHLVRDDLAAGRLVALRLAAWEGGPPPQRPLALVRRKGTPLGPVATWASNRLTSLCQLALGGADHHTT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=256, Percent_Identity=30.859375, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1786508, Length=302, Percent_Identity=24.5033112582781, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786713, Length=284, Percent_Identity=26.056338028169, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787949, Length=288, Percent_Identity=26.3888888888889, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082024, Length=266, Percent_Identity=25.9398496240602, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI157672245, Length=177, Percent_Identity=29.9435028248588, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=190, Percent_Identity=28.4210526315789, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786401, Length=174, Percent_Identity=28.1609195402299, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33231; Mature: 33231

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESVTIDQLRTLRAVAEEGSFSAAARKLGQGQPAVSQAMQRLEKQLGLRLFDRSGRVPR
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEECCCCCCCE
LTAKGEAVVAAAQRLHEDIASFQAVVGRLKSGEETKLALVVDAMFPTDALLDFVRELART
EECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHC
HPGVELALEVELLSAVTERVRERRATLGIAGADLDLTGLEQRPIALLKMIPVAAPSHPLA
CCCCEEEHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
AVKGVLTEAHLASAIQIVLSERLPEGKTGTADRGVIGSRLWRVADLMTKHSLLVGGIGWG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCC
LEPEHLVRDDLAAGRLVALRLAAWEGGPPPQRPLALVRRKGTPLGPVATWASNRLTSLCQ
CCHHHHHHHHHHCCHHHHHEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LALGGADHHTT
HHHCCCCCCCC
>Mature Secondary Structure
MLESVTIDQLRTLRAVAEEGSFSAAARKLGQGQPAVSQAMQRLEKQLGLRLFDRSGRVPR
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEECCCCCCCE
LTAKGEAVVAAAQRLHEDIASFQAVVGRLKSGEETKLALVVDAMFPTDALLDFVRELART
EECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHC
HPGVELALEVELLSAVTERVRERRATLGIAGADLDLTGLEQRPIALLKMIPVAAPSHPLA
CCCCEEEHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
AVKGVLTEAHLASAIQIVLSERLPEGKTGTADRGVIGSRLWRVADLMTKHSLLVGGIGWG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCC
LEPEHLVRDDLAAGRLVALRLAAWEGGPPPQRPLALVRRKGTPLGPVATWASNRLTSLCQ
CCHHHHHHHHHHCCHHHHHEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LALGGADHHTT
HHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]