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The map label for this gene is irpA [H]

Identifier: 108761823

GI number: 108761823

Start: 6281892

End: 6283208

Strand: Direct

Name: irpA [H]

Synonym: MXAN_5025

Alternate gene names: 108761823

Gene position: 6281892-6283208 (Clockwise)

Preceding gene: 108759731

Following gene: 108758641

Centisome position: 68.73

GC content: 69.32

Gene sequence:

>1317_bases
GTGGAAACTCGCACGTTTCCCCGGCAAACTTTGAAGTTGATTGTCATTAACAACATCGGCGTGTTAGCGAGCCCGGACAT
GAACACCGAGTCATCGCGCCCCCTCTCCGTCCTGCGTGCGCGCGCCATCGCGCTCGCGGTGCCCGCCCTCCTCTCGCTGT
CCGCGTGCAAGTCGGACAAGGTGACCCCGCCGGACGCAGGGACGGACAATCCGGGCGACACGGTGGCCGCGACGCGCGCC
GCGCTGCTGGAGTCGTCCGGAGCCTGTGTGCTGCAGACGGCACGTGAGTTCCAGACCGCGGCCACCGCGCTGGAGAGCGC
CGTCGCGGCCCACGCGGCCACGCCGGATGCCACCACGCGAGACACCGCGCGCGAGGCCTACCACCAGGCCATGGACGTGT
GGCAGATGGCGGAGGTGATGCAGTTCGGTCCCGCCGCGCCCCGCAGCCTCCCGGGCGGCGCGGAGATTCGCGACAACATC
TACTCGTGGCCCCTGGTCAGCCGGTGCGCCATCGAGGAGCAGCTCGTCAACCGAAGCTATGAGTCGGAGAGCTTCGACAG
CTCACTGGTGAGCCGCCGCGGCCTGTACGCGCTGGAGTACCTGCTCTTCTTCGAGGGCAACGACACCGCCTGCCCTGGCA
CCTCCGTCATCGTGTCCCAGGGCACGTGGGCGGCGCTGTCCGCGGACGAGCGGGCCGCGCGCAAGCGGGCGTACGCCGCC
GTGGTGGCCGCCGACGTCCACCGCCGCGCGGACGCGCTGGTGAACGCGTGGGCCCCGGACCAGGAGAATTTCGGCCGGAC
GTTGACGACGGCGGGCTCCGGCAATGCCGTGTACCCCTCCACGCAGGCGGCGCTGAACTCCGTGAGCGACGCCATCTTCT
ACTTCGAGCGCGAGGTGAAGGACCTCAAGGTGGCACGGCCGCTGGCGCTGCGTGACTGCGCCACGTCGACGTGCCCCGAA
CACCTGGAGTCACAGTTCGCCGCGCGCTCGAAGGCGAACATCCGGGCCAACCTGGTGGGCTACCGGCGCATCACGGAAGG
CTGCGGCGAGAACTTCTCCGGCACGGGCTTCGACGACCTGCTGGAGGCCTCGGGCGCCGACGCGCTGGCGGCGAAGCTGC
GCGAGCGCAACGCGGCGGCGGCAGCGGGCATCGACGCTGTTCCGGGTGAAGACCTGGCGACGGTCCTGGCTCAGGACAAG
GCCGCGATGCGTACGATGTACGACGTCATCAAGAGCGTGACGGACGTGCTCAAGACGGAGCTCGTCACCGTGCTGGACCT
GGAGCTGCCCCAGTCCGTCGAGGGGGACAATGACTGA

Upstream 100 bases:

>100_bases
CCTCGCTCAGGAACTTGTCGAACTGCAAACGATAATCGTTATCAGTTTCTTCGTGTCCGCCTCGTACTCCGGAAGACCGC
GACGGGTCAACACCCAACCT

Downstream 100 bases:

>100_bases
GGTGGCGTCCGGCGAGCGCCCCGCTTCCGGGCGCATCTGGAAGGTGCTGCTGGCGCCGCGAGACATCGCGGCGCTGGTGG
CGTTCCGCGTGGCGCTGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
METRTFPRQTLKLIVINNIGVLASPDMNTESSRPLSVLRARAIALAVPALLSLSACKSDKVTPPDAGTDNPGDTVAATRA
ALLESSGACVLQTAREFQTAATALESAVAAHAATPDATTRDTAREAYHQAMDVWQMAEVMQFGPAAPRSLPGGAEIRDNI
YSWPLVSRCAIEEQLVNRSYESESFDSSLVSRRGLYALEYLLFFEGNDTACPGTSVIVSQGTWAALSADERAARKRAYAA
VVAADVHRRADALVNAWAPDQENFGRTLTTAGSGNAVYPSTQAALNSVSDAIFYFEREVKDLKVARPLALRDCATSTCPE
HLESQFAARSKANIRANLVGYRRITEGCGENFSGTGFDDLLEASGADALAAKLRERNAAAAAGIDAVPGEDLATVLAQDK
AAMRTMYDVIKSVTDVLKTELVTVLDLELPQSVEGDND

Sequences:

>Translated_438_residues
METRTFPRQTLKLIVINNIGVLASPDMNTESSRPLSVLRARAIALAVPALLSLSACKSDKVTPPDAGTDNPGDTVAATRA
ALLESSGACVLQTAREFQTAATALESAVAAHAATPDATTRDTAREAYHQAMDVWQMAEVMQFGPAAPRSLPGGAEIRDNI
YSWPLVSRCAIEEQLVNRSYESESFDSSLVSRRGLYALEYLLFFEGNDTACPGTSVIVSQGTWAALSADERAARKRAYAA
VVAADVHRRADALVNAWAPDQENFGRTLTTAGSGNAVYPSTQAALNSVSDAIFYFEREVKDLKVARPLALRDCATSTCPE
HLESQFAARSKANIRANLVGYRRITEGCGENFSGTGFDDLLEASGADALAAKLRERNAAAAAGIDAVPGEDLATVLAQDK
AAMRTMYDVIKSVTDVLKTELVTVLDLELPQSVEGDND
>Mature_438_residues
METRTFPRQTLKLIVINNIGVLASPDMNTESSRPLSVLRARAIALAVPALLSLSACKSDKVTPPDAGTDNPGDTVAATRA
ALLESSGACVLQTAREFQTAATALESAVAAHAATPDATTRDTAREAYHQAMDVWQMAEVMQFGPAAPRSLPGGAEIRDNI
YSWPLVSRCAIEEQLVNRSYESESFDSSLVSRRGLYALEYLLFFEGNDTACPGTSVIVSQGTWAALSADERAARKRAYAA
VVAADVHRRADALVNAWAPDQENFGRTLTTAGSGNAVYPSTQAALNSVSDAIFYFEREVKDLKVARPLALRDCATSTCPE
HLESQFAARSKANIRANLVGYRRITEGCGENFSGTGFDDLLEASGADALAAKLRERNAAAAAGIDAVPGEDLATVLAQDK
AAMRTMYDVIKSVTDVLKTELVTVLDLELPQSVEGDND

Specific function: IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 46754; Mature: 46754

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METRTFPRQTLKLIVINNIGVLASPDMNTESSRPLSVLRARAIALAVPALLSLSACKSDK
CCCCCCCHHHEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
VTPPDAGTDNPGDTVAATRAALLESSGACVLQTAREFQTAATALESAVAAHAATPDATTR
CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
DTAREAYHQAMDVWQMAEVMQFGPAAPRSLPGGAEIRDNIYSWPLVSRCAIEEQLVNRSY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC
ESESFDSSLVSRRGLYALEYLLFFEGNDTACPGTSVIVSQGTWAALSADERAARKRAYAA
CCHHHHHHHHHHCCHHHEEEEHEECCCCCCCCCCEEEEECCCEEECCCHHHHHHHHHHHH
VVAADVHRRADALVNAWAPDQENFGRTLTTAGSGNAVYPSTQAALNSVSDAIFYFEREVK
HHHHHHHHHHHHHHHCCCCCHHHCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHH
DLKVARPLALRDCATSTCPEHLESQFAARSKANIRANLVGYRRITEGCGENFSGTGFDDL
HHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
LEASGADALAAKLRERNAAAAAGIDAVPGEDLATVLAQDKAAMRTMYDVIKSVTDVLKTE
HHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVTVLDLELPQSVEGDND
HHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
METRTFPRQTLKLIVINNIGVLASPDMNTESSRPLSVLRARAIALAVPALLSLSACKSDK
CCCCCCCHHHEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
VTPPDAGTDNPGDTVAATRAALLESSGACVLQTAREFQTAATALESAVAAHAATPDATTR
CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
DTAREAYHQAMDVWQMAEVMQFGPAAPRSLPGGAEIRDNIYSWPLVSRCAIEEQLVNRSY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC
ESESFDSSLVSRRGLYALEYLLFFEGNDTACPGTSVIVSQGTWAALSADERAARKRAYAA
CCHHHHHHHHHHCCHHHEEEEHEECCCCCCCCCCEEEEECCCEEECCCHHHHHHHHHHHH
VVAADVHRRADALVNAWAPDQENFGRTLTTAGSGNAVYPSTQAALNSVSDAIFYFEREVK
HHHHHHHHHHHHHHHCCCCCHHHCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHH
DLKVARPLALRDCATSTCPEHLESQFAARSKANIRANLVGYRRITEGCGENFSGTGFDDL
HHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
LEASGADALAAKLRERNAAAAAGIDAVPGEDLATVLAQDKAAMRTMYDVIKSVTDVLKTE
HHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVTVLDLELPQSVEGDND
HHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3139627 [H]