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The map label for this gene is yggS [C]

Identifier: 108761718

GI number: 108761718

Start: 3084261

End: 3084944

Strand: Reverse

Name: yggS [C]

Synonym: MXAN_2641

Alternate gene names: 108761718

Gene position: 3084944-3084261 (Counterclockwise)

Preceding gene: 108762487

Following gene: 108759125

Centisome position: 33.75

GC content: 72.81

Gene sequence:

>684_bases
ATGAGCGGAAGCGTCGCGGAGCGGCTGGCGTCGGTGCGGGAGCGGGTGGTGGCGGCCTGTGCCCGGGCGGGGCGGCCGGT
GGAGTCGGTGACGCTGGTGGCGGTGTCCAAGCTGAAGCCCGCGGACCTCATCCGCGAGGCCTATGCCGCCGGTCAGCGCG
ACTTCGGGGAGAACTACGCGCAGGAACTGCGGGACAAGGCCGCGGAGCTGGCGGACCTGGAGGGCCTGCGCTGGCATTCC
ATTGGGGCGCTCCAGACGAACAAGGTGAAGTACGTGGCGCGGGCGGCTGGGGCCTTCCACGCCCTGGACCGGCTGGAGGT
CGCTCGCGAGCTGTCGAAGCGCCGCGAGGGCGCCCCGCCCCTGCCCGTCTACGTCGAGGTCAACGTGGGCGGCGAGGCCA
CCAAGAGCGGCCTGGCGCCCGACGCGCTCGGCGCCTTCCTGGATGAGGTCCGCGCCCTGCCTGGCCTCCAGGCGGTGGGG
CTGATGGCGCTGCCGCCCCCCACGGAGGACGAGGCCCGGGCCCGTGCGGACTTCCAGGCCCTGCGCGAGCTGGCCCGTGT
GCACGGGCTGCCGGGCCTGTCCATGGGCACCACCCATGACTTCGAGTGGGCCATTGAAGAAGGCGCCACCGTCGTCCGGG
TGGGCACCGCCATCTTCGGTGAGCGCGCGCTCAAATCTCCTTGA

Upstream 100 bases:

>100_bases
CGGGCGTGGAAGGCAGCACGTCCAACGTCGTGGGCCTGCCGCTGGGCGAGACAGTGGCCCTGCTGGAGCGGGCCGGCCTC
CCCTTGCCCTGGAGGGCCTC

Downstream 100 bases:

>100_bases
ACTTCACCCGCCCCTCCGAGTTCACGCTGACCTTGAACTCGGAGCCGCAGTAGTTGCAGCGCACCTCGTCCCCCTGGGCG
AGCGCTTCATCCACGGGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSGSVAERLASVRERVVAACARAGRPVESVTLVAVSKLKPADLIREAYAAGQRDFGENYAQELRDKAAELADLEGLRWHS
IGALQTNKVKYVARAAGAFHALDRLEVARELSKRREGAPPLPVYVEVNVGGEATKSGLAPDALGAFLDEVRALPGLQAVG
LMALPPPTEDEARARADFQALRELARVHGLPGLSMGTTHDFEWAIEEGATVVRVGTAIFGERALKSP

Sequences:

>Translated_227_residues
MSGSVAERLASVRERVVAACARAGRPVESVTLVAVSKLKPADLIREAYAAGQRDFGENYAQELRDKAAELADLEGLRWHS
IGALQTNKVKYVARAAGAFHALDRLEVARELSKRREGAPPLPVYVEVNVGGEATKSGLAPDALGAFLDEVRALPGLQAVG
LMALPPPTEDEARARADFQALRELARVHGLPGLSMGTTHDFEWAIEEGATVVRVGTAIFGERALKSP
>Mature_226_residues
SGSVAERLASVRERVVAACARAGRPVESVTLVAVSKLKPADLIREAYAAGQRDFGENYAQELRDKAAELADLEGLRWHSI
GALQTNKVKYVARAAGAFHALDRLEVARELSKRREGAPPLPVYVEVNVGGEATKSGLAPDALGAFLDEVRALPGLQAVGL
MALPPPTEDEARARADFQALRELARVHGLPGLSMGTTHDFEWAIEEGATVVRVGTAIFGERALKSP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=234, Percent_Identity=40.1709401709402, Blast_Score=141, Evalue=5e-34,
Organism=Escherichia coli, GI1789321, Length=231, Percent_Identity=42.8571428571429, Blast_Score=166, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17533025, Length=232, Percent_Identity=34.9137931034483, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=234, Percent_Identity=37.1794871794872, Blast_Score=114, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45550861, Length=224, Percent_Identity=39.2857142857143, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24244; Mature: 24113

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSVAERLASVRERVVAACARAGRPVESVTLVAVSKLKPADLIREAYAAGQRDFGENYA
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
QELRDKAAELADLEGLRWHSIGALQTNKVKYVARAAGAFHALDRLEVARELSKRREGAPP
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPVYVEVNVGGEATKSGLAPDALGAFLDEVRALPGLQAVGLMALPPPTEDEARARADFQA
CCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHCCCCHHCCEEECCCCCCHHHHHHHHHHH
LRELARVHGLPGLSMGTTHDFEWAIEEGATVVRVGTAIFGERALKSP
HHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEHHHHHHHHHHCCC
>Mature Secondary Structure 
SGSVAERLASVRERVVAACARAGRPVESVTLVAVSKLKPADLIREAYAAGQRDFGENYA
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
QELRDKAAELADLEGLRWHSIGALQTNKVKYVARAAGAFHALDRLEVARELSKRREGAPP
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPVYVEVNVGGEATKSGLAPDALGAFLDEVRALPGLQAVGLMALPPPTEDEARARADFQA
CCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHCCCCHHCCEEECCCCCCHHHHHHHHHHH
LRELARVHGLPGLSMGTTHDFEWAIEEGATVVRVGTAIFGERALKSP
HHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]