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The map label for this gene is rpoE [H]

Identifier: 108761504

GI number: 108761504

Start: 5315942

End: 5316469

Strand: Reverse

Name: rpoE [H]

Synonym: MXAN_4316

Alternate gene names: 108761504

Gene position: 5316469-5315942 (Counterclockwise)

Preceding gene: 108762502

Following gene: 108762806

Centisome position: 58.17

GC content: 71.02

Gene sequence:

>528_bases
ATGCCCGTGAGCGCCCGCGCCTTCATCGAACGTGCCCTGGAGCACCTGCCCGTCTTGAGGCGGGTGGGGCGTCGGCTGAC
GGGCAGCGCCGCGGAAGCAGATGACCTGGTGCAGGAGACGCTGACGCGCGCCCTGGAGCAGCGCGGTGCGCTGAGAGAGA
CCGAGCGCCTCAAGGCCTGGCTGCTCGCCGTACAGCGCACCGTGTTCCTCAACTCCCGCCGGGGTCTGCGGCCTCACCTG
GAGGTGCTGGAGGGCGGGCTGGGCCGGGCGCTTCCTCCGGAGCCATCCGCGGACCTGGAGGCGGAGCTGCACGCCCGCAC
CTTGAGTGCGGGGATGCAGGCGGCGCTCGACTCCCTGGCGCCGGAGTGGCGCGACACGTTGTGGCTGCGGGAAGTCGAGG
AGCTGAGCTACGAGGAGATTGCTCAGGTGCAGGGCTGCCCGGTGGGCACCGTGCGCTCGCGGCTGGCGAGGGCGCGGCTG
GCGATGCTCGACTTCCTCGAGAAGGAGAAGGTCCATGGAAGCCTGTAG

Upstream 100 bases:

>100_bases
CAGTAACCCCGCGTCCGCCACGCGGAAGGCGAGGGCGCTCCTCCTTCTCGAGCGCCCTCGTCCTTTTCCGGGAACCTTTC
ACCCGCCCCACCGTGTCCTC

Downstream 100 bases:

>100_bases
CCCCCAGTGGCAGGAGCGTCTCTCCGCGTGGTTCGACGGTGAGGTCCAGGCGCATGAACAGCAGGCGGTGGCGCACCACC
TGTCCCGATGCGCAGGCTGT

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MPVSARAFIERALEHLPVLRRVGRRLTGSAAEADDLVQETLTRALEQRGALRETERLKAWLLAVQRTVFLNSRRGLRPHL
EVLEGGLGRALPPEPSADLEAELHARTLSAGMQAALDSLAPEWRDTLWLREVEELSYEEIAQVQGCPVGTVRSRLARARL
AMLDFLEKEKVHGSL

Sequences:

>Translated_175_residues
MPVSARAFIERALEHLPVLRRVGRRLTGSAAEADDLVQETLTRALEQRGALRETERLKAWLLAVQRTVFLNSRRGLRPHL
EVLEGGLGRALPPEPSADLEAELHARTLSAGMQAALDSLAPEWRDTLWLREVEELSYEEIAQVQGCPVGTVRSRLARARL
AMLDFLEKEKVHGSL
>Mature_174_residues
PVSARAFIERALEHLPVLRRVGRRLTGSAAEADDLVQETLTRALEQRGALRETERLKAWLLAVQRTVFLNSRRGLRPHLE
VLEGGLGRALPPEPSADLEAELHARTLSAGMQAALDSLAPEWRDTLWLREVEELSYEEIAQVQGCPVGTVRSRLARARLA
MLDFLEKEKVHGSL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19575; Mature: 19444

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSARAFIERALEHLPVLRRVGRRLTGSAAEADDLVQETLTRALEQRGALRETERLKAW
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LLAVQRTVFLNSRRGLRPHLEVLEGGLGRALPPEPSADLEAELHARTLSAGMQAALDSLA
HHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
PEWRDTLWLREVEELSYEEIAQVQGCPVGTVRSRLARARLAMLDFLEKEKVHGSL
HHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PVSARAFIERALEHLPVLRRVGRRLTGSAAEADDLVQETLTRALEQRGALRETERLKAW
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LLAVQRTVFLNSRRGLRPHLEVLEGGLGRALPPEPSADLEAELHARTLSAGMQAALDSLA
HHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
PEWRDTLWLREVEELSYEEIAQVQGCPVGTVRSRLARARLAMLDFLEKEKVHGSL
HHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]