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The map label for this gene is oprF [H]

Identifier: 108761291

GI number: 108761291

Start: 6304978

End: 6306900

Strand: Direct

Name: oprF [H]

Synonym: MXAN_5042

Alternate gene names: 108761291

Gene position: 6304978-6306900 (Clockwise)

Preceding gene: 108757061

Following gene: 108762059

Centisome position: 68.98

GC content: 68.69

Gene sequence:

>1923_bases
TTGCGTGCAAAACACTCCGCGTCTCAAGTATGGCGGACGCCCGCGTGCGCTTTTCCGGCGCCACGCGAGGGGGAGGAACT
CTTGTCTTCACATCCGTATCACCCATGGCTTGGAGGTCTGGCCGTCCTCTGGGCGGTCACGGCTCAGGCCCAGGCGCAGC
GCATTCCCGGCATCGAGCTGGAGCGGCTGCAACTCAATCCCGGTGCACGCGACAGTCTGGTGTTGTCCACCGGCGACCTC
ATGTCCCGCGGCGAGTACCGCCTCGGCTTCACCGGGCACTATGAGAAGGAGCCCTTGGTGCTCGTCTCCGGTGGAGAGCA
ACAAGGTGTCATCGTCTCCAACCGCGTGACGGTGCACCTCAGTGGTGCCTATGCCATCACCGACTGGTTGGAGCTCGGCG
CGCAGGTGCCCATCGTTTCCCAGTGGGGACCGGACACCGCGGCGCTGGGCGTCGCCACGCCGTCCACGAGCGCGCTTGGC
ACGCCGTGGGTCCAGGCGCGCGCGGGAATCCTCTCCGAGCAGCGCGGAGGGCTGATGGATTTGGGCCTGCACCTCGGCGC
GGCCCTGCCCATTGGCAGCACGGAGACGCTCACCCGGGACCAGGGCTTCGTCTTCTCGCCTCGGCTCGGCCTGGGCAAGC
AGTTGGGTGGCACGTGGCGCGTGGGCGCCGACCTGGGCGCGCTGGTGCGGACCAAGACGTATGCGCTGTCCCCCAACACG
CAGCCGCACCTCGACGAGCAGGGCACGGAGCTGAACGGCGGCGTCAACCTGTCCGCCGGCCTGCTCGGCTTCCGCCAGGA
GCTGGTGGTGCGCGGCACCCTGCCCGTCGCGGATGCGCCGGAGTCGATGGAAGTGCTGCTGGGCGTGCGCGTTCCCATGC
CCGCGGGCACGGAAGTCTACGCCATGGGTGGCCCTGGCTTCGGCAGCACGCCGGGCACGCCATCGTTCCGGGTGCTCGCC
GGCCTCACCTTCGGCACCCCCGCCTCCACGCCCAACGCATGTGTGGAGGGTCAGCCGCATGACCCCGCCCGCTGTCCGGA
CTTCGACCTGGACGGTGACGGCATCAAGAACGCCGCCGACCACTGCCCCACCGTCGAGGGCCTGTCGGAGCTGAATGGCT
GCCCGGACGGGGACGACGACGGCGACGGCCTGCCCAACCTGGCGGACCGCTGCCCGAAGGAGGCGGAGAACTTCAACGGC
TTCGAGGACCAGGACGGCTGCCCGGATGACCCGGACACGGACGGGGACGGCATCTCCGACGCCAAGGACCAGTGCCCGGA
CCAGGCCGAGGACAAGGACGGCTTCCAGGACGAGGACGGCTGCCCCGACCCGGACAACGACAACGACGGCGTGCTCGACA
CCGCCGACCGCTGCCCCAACGAGGCCGGCCCCAAGGAGAACCGCGGCTGCCCGGACAAGGACACCGACGGTGACGGCATC
GTCGACCGGCTCGACAACTGCCCCACCGAGCCTGGCCCGGCGAAGAACCACGGCTGCAAGGAGAAGCAGCTCGCGCAGAT
TGGCGAGAATCGCATCCAACTGCTCGAGGCCGTCTACTTCGAGAACAACAAGGACATCATCATCGCGCGCAGCAACAAGC
TGCTCGACACGGTGGCCAACATCCTCATCGCCCACCCGGAAGTGGAGAAGGTGCGTGTCGAGGGCCACACCGACAACCGC
GGCAACCCTGACTACAACCTGGACCTGTCCCAGCGCCGCGCCGACGCCGTCGTTCGCTACCTGGTGAGCAAGGGCGTGGC
CCGGGAGCGCCTGGATGCCAAGGGCTTCGGTCCCACCCAGCCCATCGCGGACAACAACACCACCCAGGGCCGCGCGAAGA
ACCGCCGCGTGGAGTTCAAGATCGTCGGCGACGCAGAGGGCGTGCAGACGCAGCAGGGCGAACCCTCTCCCGACACCCAC
TGA

Upstream 100 bases:

>100_bases
GACACGGCGCTGACACGTCAACCGCCCCCTCCGGACCCAACCCACTTCACAGGTCCCTCTCACACACCTCTGAGGTCCCC
CCCGCAACAAACGTGGCGCG

Downstream 100 bases:

>100_bases
GAACCGAGGCAGACATCCCCATGAAAACGCGTGTCCTCTTCAAGACGGCGGCGCTCTGTCTCGCGCTGCTCTCATCCCTG
ACCGGCTGTGATTCGGGCGG

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 640; Mature: 640

Protein sequence:

>640_residues
MRAKHSASQVWRTPACAFPAPREGEELLSSHPYHPWLGGLAVLWAVTAQAQAQRIPGIELERLQLNPGARDSLVLSTGDL
MSRGEYRLGFTGHYEKEPLVLVSGGEQQGVIVSNRVTVHLSGAYAITDWLELGAQVPIVSQWGPDTAALGVATPSTSALG
TPWVQARAGILSEQRGGLMDLGLHLGAALPIGSTETLTRDQGFVFSPRLGLGKQLGGTWRVGADLGALVRTKTYALSPNT
QPHLDEQGTELNGGVNLSAGLLGFRQELVVRGTLPVADAPESMEVLLGVRVPMPAGTEVYAMGGPGFGSTPGTPSFRVLA
GLTFGTPASTPNACVEGQPHDPARCPDFDLDGDGIKNAADHCPTVEGLSELNGCPDGDDDGDGLPNLADRCPKEAENFNG
FEDQDGCPDDPDTDGDGISDAKDQCPDQAEDKDGFQDEDGCPDPDNDNDGVLDTADRCPNEAGPKENRGCPDKDTDGDGI
VDRLDNCPTEPGPAKNHGCKEKQLAQIGENRIQLLEAVYFENNKDIIIARSNKLLDTVANILIAHPEVEKVRVEGHTDNR
GNPDYNLDLSQRRADAVVRYLVSKGVARERLDAKGFGPTQPIADNNTTQGRAKNRRVEFKIVGDAEGVQTQQGEPSPDTH

Sequences:

>Translated_640_residues
MRAKHSASQVWRTPACAFPAPREGEELLSSHPYHPWLGGLAVLWAVTAQAQAQRIPGIELERLQLNPGARDSLVLSTGDL
MSRGEYRLGFTGHYEKEPLVLVSGGEQQGVIVSNRVTVHLSGAYAITDWLELGAQVPIVSQWGPDTAALGVATPSTSALG
TPWVQARAGILSEQRGGLMDLGLHLGAALPIGSTETLTRDQGFVFSPRLGLGKQLGGTWRVGADLGALVRTKTYALSPNT
QPHLDEQGTELNGGVNLSAGLLGFRQELVVRGTLPVADAPESMEVLLGVRVPMPAGTEVYAMGGPGFGSTPGTPSFRVLA
GLTFGTPASTPNACVEGQPHDPARCPDFDLDGDGIKNAADHCPTVEGLSELNGCPDGDDDGDGLPNLADRCPKEAENFNG
FEDQDGCPDDPDTDGDGISDAKDQCPDQAEDKDGFQDEDGCPDPDNDNDGVLDTADRCPNEAGPKENRGCPDKDTDGDGI
VDRLDNCPTEPGPAKNHGCKEKQLAQIGENRIQLLEAVYFENNKDIIIARSNKLLDTVANILIAHPEVEKVRVEGHTDNR
GNPDYNLDLSQRRADAVVRYLVSKGVARERLDAKGFGPTQPIADNNTTQGRAKNRRVEFKIVGDAEGVQTQQGEPSPDTH
>Mature_640_residues
MRAKHSASQVWRTPACAFPAPREGEELLSSHPYHPWLGGLAVLWAVTAQAQAQRIPGIELERLQLNPGARDSLVLSTGDL
MSRGEYRLGFTGHYEKEPLVLVSGGEQQGVIVSNRVTVHLSGAYAITDWLELGAQVPIVSQWGPDTAALGVATPSTSALG
TPWVQARAGILSEQRGGLMDLGLHLGAALPIGSTETLTRDQGFVFSPRLGLGKQLGGTWRVGADLGALVRTKTYALSPNT
QPHLDEQGTELNGGVNLSAGLLGFRQELVVRGTLPVADAPESMEVLLGVRVPMPAGTEVYAMGGPGFGSTPGTPSFRVLA
GLTFGTPASTPNACVEGQPHDPARCPDFDLDGDGIKNAADHCPTVEGLSELNGCPDGDDDGDGLPNLADRCPKEAENFNG
FEDQDGCPDDPDTDGDGISDAKDQCPDQAEDKDGFQDEDGCPDPDNDNDGVLDTADRCPNEAGPKENRGCPDKDTDGDGI
VDRLDNCPTEPGPAKNHGCKEKQLAQIGENRIQLLEAVYFENNKDIIIARSNKLLDTVANILIAHPEVEKVRVEGHTDNR
GNPDYNLDLSQRRADAVVRYLVSKGVARERLDAKGFGPTQPIADNNTTQGRAKNRRVEFKIVGDAEGVQTQQGEPSPDTH

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=87, Percent_Identity=44.8275862068966, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1786962, Length=99, Percent_Identity=40.4040404040404, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788957, Length=136, Percent_Identity=33.8235294117647, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 68145; Mature: 68145

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2 ; PS00539 PYROKININ ; PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAKHSASQVWRTPACAFPAPREGEELLSSHPYHPWLGGLAVLWAVTAQAQAQRIPGIEL
CCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
ERLQLNPGARDSLVLSTGDLMSRGEYRLGFTGHYEKEPLVLVSGGEQQGVIVSNRVTVHL
EEEEECCCCCCEEEEECCHHHCCCCEEECCCCCCCCCCEEEEECCCCCCEEEECEEEEEE
SGAYAITDWLELGAQVPIVSQWGPDTAALGVATPSTSALGTPWVQARAGILSEQRGGLMD
CCCHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEE
LGLHLGAALPIGSTETLTRDQGFVFSPRLGLGKQLGGTWRVGADLGALVRTKTYALSPNT
HHHHHCCCCCCCCCCCEECCCCEEECCCCCCCHHCCCCEEECCCHHHHHHEEEEEECCCC
QPHLDEQGTELNGGVNLSAGLLGFRQELVVRGTLPVADAPESMEVLLGVRVPMPAGTEVY
CCCCCCCCCCCCCCCEEHHHHHHHHHHHEEECCCCCCCCCHHEEEEEEEECCCCCCCEEE
AMGGPGFGSTPGTPSFRVLAGLTFGTPASTPNACVEGQPHDPARCPDFDLDGDGIKNAAD
EECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
HCPTVEGLSELNGCPDGDDDGDGLPNLADRCPKEAENFNGFEDQDGCPDDPDTDGDGISD
CCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
AKDQCPDQAEDKDGFQDEDGCPDPDNDNDGVLDTADRCPNEAGPKENRGCPDKDTDGDGI
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCCCCCCCCHH
VDRLDNCPTEPGPAKNHGCKEKQLAQIGENRIQLLEAVYFENNKDIIIARSNKLLDTVAN
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
ILIAHPEVEKVRVEGHTDNRGNPDYNLDLSQRRADAVVRYLVSKGVARERLDAKGFGPTQ
HHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCC
PIADNNTTQGRAKNRRVEFKIVGDAEGVQTQQGEPSPDTH
CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRAKHSASQVWRTPACAFPAPREGEELLSSHPYHPWLGGLAVLWAVTAQAQAQRIPGIEL
CCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
ERLQLNPGARDSLVLSTGDLMSRGEYRLGFTGHYEKEPLVLVSGGEQQGVIVSNRVTVHL
EEEEECCCCCCEEEEECCHHHCCCCEEECCCCCCCCCCEEEEECCCCCCEEEECEEEEEE
SGAYAITDWLELGAQVPIVSQWGPDTAALGVATPSTSALGTPWVQARAGILSEQRGGLMD
CCCHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEE
LGLHLGAALPIGSTETLTRDQGFVFSPRLGLGKQLGGTWRVGADLGALVRTKTYALSPNT
HHHHHCCCCCCCCCCCEECCCCEEECCCCCCCHHCCCCEEECCCHHHHHHEEEEEECCCC
QPHLDEQGTELNGGVNLSAGLLGFRQELVVRGTLPVADAPESMEVLLGVRVPMPAGTEVY
CCCCCCCCCCCCCCCEEHHHHHHHHHHHEEECCCCCCCCCHHEEEEEEEECCCCCCCEEE
AMGGPGFGSTPGTPSFRVLAGLTFGTPASTPNACVEGQPHDPARCPDFDLDGDGIKNAAD
EECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
HCPTVEGLSELNGCPDGDDDGDGLPNLADRCPKEAENFNGFEDQDGCPDDPDTDGDGISD
CCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
AKDQCPDQAEDKDGFQDEDGCPDPDNDNDGVLDTADRCPNEAGPKENRGCPDKDTDGDGI
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCCCCCCCCHH
VDRLDNCPTEPGPAKNHGCKEKQLAQIGENRIQLLEAVYFENNKDIIIARSNKLLDTVAN
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
ILIAHPEVEKVRVEGHTDNRGNPDYNLDLSQRRADAVVRYLVSKGVARERLDAKGFGPTQ
HHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCC
PIADNNTTQGRAKNRRVEFKIVGDAEGVQTQQGEPSPDTH
CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]