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The map label for this gene is dapF [H]

Identifier: 108761193

GI number: 108761193

Start: 6322580

End: 6323431

Strand: Reverse

Name: dapF [H]

Synonym: MXAN_5054

Alternate gene names: 108761193

Gene position: 6323431-6322580 (Counterclockwise)

Preceding gene: 108758810

Following gene: 108757101

Centisome position: 69.19

GC content: 70.77

Gene sequence:

>852_bases
GTGGAAGCTCGCGAGCGCATCTTCAAGTATCAGGGCCTGGGCAATGACTTCGTCGTGCTGGACCGGCGCGGCTCCGGCGA
GGACATCGACGCCGCCACGTCGCGGTGGATGTGCGACCGGCGCCTGGGCATTGGCGGGGACGGGGTGCTGGCGCTGCTGC
CCTCCGAGCGTGGCATTGCCCGCATGGTCGTGCACAACGCCGACGGCAGCATCGCGGAGATGTGTGGCAACGGACTGCGC
TGCGCGGTGAAGTTCCTGGTGGATGATTCGGGCCAGACGCCAGGCCACATCAACGTGGAGACCGGGGCGGGCGTGCTCAC
CTGCTACCCCTCGTATGGCGAGGGCGGCGTGGTGGCCGTGGACATCTCCATGGGGCCCGCCCGGCTGGTGGCCCCCAACC
TGCCTTCGGGCGCCACGGGGCAGCCCTTTCTGGATGCCTTGGTGCCGGGCCATCCGCCCCTGCGCGCCTACGCGGTGAGC
ATGGGCAATCCCCACATGGTCCTCCTGGACCAGCCGCTGGAGGATGCCTCGCGCCTGGGGCCCCTGCTGGAGCACCACCC
GTCCTTTCCGGACCGCACCAACGTGGAGTTCGTCCGTGTGGACTCGGACGGCCTCACCGTGGTGGTCTGGGAGCGAGGCT
GCGGCCTCACCCAGGCCTGTGGGACGGGCGCCTGCGCGTCCGCCGTGGCCGCCGTGCTGGCCAAACGGCTCCCGGCCGAT
GCCTGGCTGCGCGTCACCCTGCCAGGGGGAGACCTGAGCATCCGCGTCCCCGCCGACCTGTCCGACATCCGCCTCCGTGG
ACCGGTGGCCTTCGTCTTCGAGGGCGTTGTCGCGACTCCCTCGGGCCGGTAA

Upstream 100 bases:

>100_bases
GCGCCCCCGAGGCGCGGTGCCCGCGCTGGACCTGCCGCCCCAGACATCGCCCACGAAGCCGGACGAGCGCGAATAGCCGC
TCGCGACTAGGATTGCGCTC

Downstream 100 bases:

>100_bases
CCTCCCGCGTTCCTCTCGCTCCCAGGTCAGAACGCGCCGTGGCCGGACCCATCCTCGTCGTCGACGACGACATGTTCTTC
CGTCAGCTCGCCAGCGACTT

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MEARERIFKYQGLGNDFVVLDRRGSGEDIDAATSRWMCDRRLGIGGDGVLALLPSERGIARMVVHNADGSIAEMCGNGLR
CAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAVDISMGPARLVAPNLPSGATGQPFLDALVPGHPPLRAYAVS
MGNPHMVLLDQPLEDASRLGPLLEHHPSFPDRTNVEFVRVDSDGLTVVVWERGCGLTQACGTGACASAVAAVLAKRLPAD
AWLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSGR

Sequences:

>Translated_283_residues
MEARERIFKYQGLGNDFVVLDRRGSGEDIDAATSRWMCDRRLGIGGDGVLALLPSERGIARMVVHNADGSIAEMCGNGLR
CAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAVDISMGPARLVAPNLPSGATGQPFLDALVPGHPPLRAYAVS
MGNPHMVLLDQPLEDASRLGPLLEHHPSFPDRTNVEFVRVDSDGLTVVVWERGCGLTQACGTGACASAVAAVLAKRLPAD
AWLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSGR
>Mature_283_residues
MEARERIFKYQGLGNDFVVLDRRGSGEDIDAATSRWMCDRRLGIGGDGVLALLPSERGIARMVVHNADGSIAEMCGNGLR
CAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAVDISMGPARLVAPNLPSGATGQPFLDALVPGHPPLRAYAVS
MGNPHMVLLDQPLEDASRLGPLLEHHPSFPDRTNVEFVRVDSDGLTVVVWERGCGLTQACGTGACASAVAAVLAKRLPAD
AWLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSGR

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=274, Percent_Identity=33.2116788321168, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 29761; Mature: 29761

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEARERIFKYQGLGNDFVVLDRRGSGEDIDAATSRWMCDRRLGIGGDGVLALLPSERGIA
CCHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCEE
RMVVHNADGSIAEMCGNGLRCAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAV
EEEEECCCCCHHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCEEEE
DISMGPARLVAPNLPSGATGQPFLDALVPGHPPLRAYAVSMGNPHMVLLDQPLEDASRLG
EECCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHC
PLLEHHPSFPDRTNVEFVRVDSDGLTVVVWERGCGLTQACGTGACASAVAAVLAKRLPAD
HHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHCCCC
AWLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSGR
CEEEEEECCCCEEEEECCCCCCEEECCCEEEEEECEEECCCCC
>Mature Secondary Structure
MEARERIFKYQGLGNDFVVLDRRGSGEDIDAATSRWMCDRRLGIGGDGVLALLPSERGIA
CCHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCEE
RMVVHNADGSIAEMCGNGLRCAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAV
EEEEECCCCCHHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCEEEE
DISMGPARLVAPNLPSGATGQPFLDALVPGHPPLRAYAVSMGNPHMVLLDQPLEDASRLG
EECCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHC
PLLEHHPSFPDRTNVEFVRVDSDGLTVVVWERGCGLTQACGTGACASAVAAVLAKRLPAD
HHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHCCCC
AWLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSGR
CEEEEEECCCCEEEEECCCCCCEEECCCEEEEEECEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA