Click here to switch to the map view.

The map label for this gene is yfiA [C]

Identifier: 108761005

GI number: 108761005

Start: 521331

End: 521666

Strand: Direct

Name: yfiA [C]

Synonym: MXAN_0457

Alternate gene names: 108761005

Gene position: 521331-521666 (Clockwise)

Preceding gene: 108762108

Following gene: 108759071

Centisome position: 5.7

GC content: 66.37

Gene sequence:

>336_bases
ATGAACCGAGCGCTGCAAATCACCTATCGGGGCATGGAGACGAGCGAGGCCCTGAGCGAGCACATCCGCGACCACGCCGG
CAAGCTGGAGCAGTTCTACGACGGCATCGTGGGGTGCCACGTGGTGGTGGAGGAGCCGCACCGGCACAAGCAGCACGGCA
GGCATTTCCACGTGCGCGTGGATGTGAGTGTGCCAGGAAGGAACATCGTCGCCAGCCGGGATCCGCAGGCGCGCACCGGG
CACGAGGATGCCTATCAAGCGGTGACGGAGGCGTTCGACGCCGCCAGGCGCCAGCTCCAACACTACGCGGACGCGCTCAA
CACGCACCACGGGTGA

Upstream 100 bases:

>100_bases
TGGAATTTCGCGGACCTGGCGCGCTGGCCGCGCAAATGCATCCGGAAGGGAAGGCAACCCGATGCCCCCTTCCCGGGGGC
ACCACCACGCGAGGCGGACG

Downstream 100 bases:

>100_bases
CGGTGTCGCTCGCGCGGCGCTTCATTCCCATTACAGACATCCAGCTGGGCGGTCGCGCGACGCACATTCCGAACATTTGC
CATTCAAACCCCTGACAGAC

Product: putative sigma-54 modulation protein

Products: NA

Alternate protein names: SSU Ribosomal Modulation Protein; Cold-Shock Domain-Containing Protein; Sigma-54 Modulation Protein

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVEEPHRHKQHGRHFHVRVDVSVPGRNIVASRDPQARTG
HEDAYQAVTEAFDAARRQLQHYADALNTHHG

Sequences:

>Translated_111_residues
MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVEEPHRHKQHGRHFHVRVDVSVPGRNIVASRDPQARTG
HEDAYQAVTEAFDAARRQLQHYADALNTHHG
>Mature_111_residues
MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVEEPHRHKQHGRHFHVRVDVSVPGRNIVASRDPQARTG
HEDAYQAVTEAFDAARRQLQHYADALNTHHG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12640; Mature: 12640

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVEEPHRHKQHGRHFHVRV
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHCCCEEEEEE
DVSVPGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQLQHYADALNTHHG
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRALQITYRGMETSEALSEHIRDHAGKLEQFYDGIVGCHVVVEEPHRHKQHGRHFHVRV
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHCCCEEEEEE
DVSVPGRNIVASRDPQARTGHEDAYQAVTEAFDAARRQLQHYADALNTHHG
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA