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The map label for this gene is 108760996

Identifier: 108760996

GI number: 108760996

Start: 6238072

End: 6238674

Strand: Reverse

Name: 108760996

Synonym: MXAN_4987

Alternate gene names: NA

Gene position: 6238674-6238072 (Counterclockwise)

Preceding gene: 108759910

Following gene: 108762959

Centisome position: 68.26

GC content: 67.0

Gene sequence:

>603_bases
ATGAGCGGCCAACGCATTGCCACAGTCATTCGCATTCCTGTGGCCTACAGTACGGATGTGCATCCCGACGGGTTCGAGGA
GTTCGCGCATCGTGTCAGGCCCATGCTGTTGGCCCTGGCGAGACGGTTGTGCGGTCAGGGGGGCATCGATCCGGAAGACC
TGGTGCAGGAGGCGCTCACGCGCGGACTGCTGCATCACGGGGCACTCGCTGCGCAGCCGGAGCCCGTCTACAGGGCGTGG
TTGTGTCGGGCGATGACCAATCATTTCCTCGACCAGTGCCGCAAGCGGCGCTCGGAGTTGCTGGAGCAGGACCGTCCGGA
GCTGCGGCTGGTGCGCGAGGGAGTGGCGGCCCCCGAGCCGGAGGCCATGGAGGTCTGGGAGCACATCTCGGCGAAGGACT
TCAAGGCGGCCATCGCCCAGTTGTCGAATCCCAGGGTGCGTGAGGCGTATTCGCTGCATGCCTCGGGGCTGCGCTACCGC
GCCATCGCCCTGCGCATGGGCGTCCCCGAAGGCACCGTGGGGAGCTGGCTCTATCAGGCCCGCAAGGAGTTGAAGGCGCT
TCTGCTGCCGCTCACCGGGAGCGACGGAGGAGGCAGCGCGTGA

Upstream 100 bases:

>100_bases
GTGAGCGGGCGCAATTTGATGCGATTGAGTCTGCTTCACGACGGCCTTCCAAGGATTGCCCCGGACTTCGTTTCGATAGG
CGTGGAAGGAGTCCGGGTCG

Downstream 100 bases:

>100_bases
TGGGGACGCTCTGTAACAGGCTGTCCCTCTTCCTCGATGGCGAGCTGCCGCCCGTGGACGAGGAGAACTTCCGGCATCAC
CTCGCTCGCTGTGACCCCTG

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MSGQRIATVIRIPVAYSTDVHPDGFEEFAHRVRPMLLALARRLCGQGGIDPEDLVQEALTRGLLHHGALAAQPEPVYRAW
LCRAMTNHFLDQCRKRRSELLEQDRPELRLVREGVAAPEPEAMEVWEHISAKDFKAAIAQLSNPRVREAYSLHASGLRYR
AIALRMGVPEGTVGSWLYQARKELKALLLPLTGSDGGGSA

Sequences:

>Translated_200_residues
MSGQRIATVIRIPVAYSTDVHPDGFEEFAHRVRPMLLALARRLCGQGGIDPEDLVQEALTRGLLHHGALAAQPEPVYRAW
LCRAMTNHFLDQCRKRRSELLEQDRPELRLVREGVAAPEPEAMEVWEHISAKDFKAAIAQLSNPRVREAYSLHASGLRYR
AIALRMGVPEGTVGSWLYQARKELKALLLPLTGSDGGGSA
>Mature_199_residues
SGQRIATVIRIPVAYSTDVHPDGFEEFAHRVRPMLLALARRLCGQGGIDPEDLVQEALTRGLLHHGALAAQPEPVYRAWL
CRAMTNHFLDQCRKRRSELLEQDRPELRLVREGVAAPEPEAMEVWEHISAKDFKAAIAQLSNPRVREAYSLHASGLRYRA
IALRMGVPEGTVGSWLYQARKELKALLLPLTGSDGGGSA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22211; Mature: 22080

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGQRIATVIRIPVAYSTDVHPDGFEEFAHRVRPMLLALARRLCGQGGIDPEDLVQEALT
CCCCCEEHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RGLLHHGALAAQPEPVYRAWLCRAMTNHFLDQCRKRRSELLEQDRPELRLVREGVAAPEP
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
EAMEVWEHISAKDFKAAIAQLSNPRVREAYSLHASGLRYRAIALRMGVPEGTVGSWLYQA
HHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHH
RKELKALLLPLTGSDGGGSA
HHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SGQRIATVIRIPVAYSTDVHPDGFEEFAHRVRPMLLALARRLCGQGGIDPEDLVQEALT
CCCCEEHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RGLLHHGALAAQPEPVYRAWLCRAMTNHFLDQCRKRRSELLEQDRPELRLVREGVAAPEP
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
EAMEVWEHISAKDFKAAIAQLSNPRVREAYSLHASGLRYRAIALRMGVPEGTVGSWLYQA
HHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHH
RKELKALLLPLTGSDGGGSA
HHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA