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The map label for this gene is cdnL [H]

Identifier: 108760890

GI number: 108760890

Start: 3067259

End: 3067753

Strand: Direct

Name: cdnL [H]

Synonym: MXAN_2627

Alternate gene names: 108760890

Gene position: 3067259-3067753 (Clockwise)

Preceding gene: 108762730

Following gene: 108761626

Centisome position: 33.56

GC content: 59.39

Gene sequence:

>495_bases
GTGCAGACCAGCTTCAAGACTGGTGACAAGGCGGTCTACCCGGGCCAGGGCGTCGGTGAAGTGATGGGTATCGAACACAC
CGAGGTGGCCGGGCAGCGCCAGTCCTTCTACGTGCTGCGCATCCTGGAGAACGGAATGCGGATCATGATCCCGATCAACA
AGGTCGGGTCGGTCGGTCTCCGGGAGATCATCAGCGAGGAGGACGTCAAGCAGGTCTACTCCATCCTCAAGGAGAAGGAC
ATCTCCGTTGACTCCACGACGTGGAACCGTCGTTACCGGGAGTACATGGAGAAGATCAAGACGGGCTCGGTGTTCGAAAT
CGCCGAAGTGCTCCGCGACCTGTACCTCCTGAAGGGCGACAAGGACCTCTCCTTCGGCGAGCGGAAGATGCTGGATACCG
CGCGCTCGCTGCTCATCAAGGAGCTGTCGCTGGCCAAGGACTGCTCCGAGGACGAAATCGAGTCGGACCTGAAGAAGATC
TTCAATCTGGCCTGA

Upstream 100 bases:

>100_bases
CGTCCTGGGTGGTCAAGGCGTTATCGTTGCCCGTGGATGTGGTTTGTGGTAGTAGTGCCCGGCTGAAAGGCCGGGAACGA
GTCTTTCAAGGAGGCAGTGA

Downstream 100 bases:

>100_bases
GCCGTCCAGCTGCCGTCCAAGACTCGTCGCCCCGGGTTCCCCAGTCAGGGAGCTCGGGGTTTCGTCTTTCCACGCCACAT
CATGTCCGCCCATGAGTGAG

Product: CarD family transcriptional regulator CdnL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MQTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGSVGLREIISEEDVKQVYSILKEKD
ISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGDKDLSFGERKMLDTARSLLIKELSLAKDCSEDEIESDLKKI
FNLA

Sequences:

>Translated_164_residues
MQTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGSVGLREIISEEDVKQVYSILKEKD
ISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGDKDLSFGERKMLDTARSLLIKELSLAKDCSEDEIESDLKKI
FNLA
>Mature_164_residues
MQTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGSVGLREIISEEDVKQVYSILKEKD
ISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGDKDLSFGERKMLDTARSLLIKELSLAKDCSEDEIESDLKKI
FNLA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 18719; Mature: 18719

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGSVGL
CCCCCCCCCCCCCCCCCCHHHHCCCHHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCHHH
REIISEEDVKQVYSILKEKDISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGD
HHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
KDLSFGERKMLDTARSLLIKELSLAKDCSEDEIESDLKKIFNLA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGSVGL
CCCCCCCCCCCCCCCCCCHHHHCCCHHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCHHH
REIISEEDVKQVYSILKEKDISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGD
HHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
KDLSFGERKMLDTARSLLIKELSLAKDCSEDEIESDLKKIFNLA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]