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The map label for this gene is ybeY [C]

Identifier: 108760629

GI number: 108760629

Start: 5932337

End: 5933221

Strand: Reverse

Name: ybeY [C]

Synonym: MXAN_4736

Alternate gene names: 108760629

Gene position: 5933221-5932337 (Counterclockwise)

Preceding gene: 108759457

Following gene: 108760317

Centisome position: 64.92

GC content: 70.96

Gene sequence:

>885_bases
ATGAGCGGAGCACGAAGGGGCAATGGCGTGAGATTGCGCAAGGGGAAGCTGATTCCCCGTGACGACGGCAAGCGCATCGA
GGAGTTCGTGGGCGCGGCCACCACCAGCACGGACTCCGCGTCCGTCGCGCGGATGCTGGCGCCCCCCGGGTGGTCGGAGC
CCGCGCAGCGCCCCGAATTCGATGAGGTCGTCATCGTCCTCACGGGCGAGCTGACCATCGTGGTGGAGGGGCGGCGCGAG
CGCATCTCCGCGGGCGAGGTCGGACTGGTGCCGCGCGGCAAGCGCGTGGTGTACCGCAACGACGGCCAGGGGGCGTGTGA
CTACTGGTCGGTGTGCGCGCCCGCGTTCCGCCCGGAGCTGGCGCACATGGAGACGCCCAAGCCTCGCGTGCAGGAGAACC
ACGTCACCATCCAGGTGGCGCATGGCCAGGGCCGGGACTTCGCGCGCCTGCTGACCACCTGGGCCAGGGCGTACCTGGTG
CAGCTCGAGCTATCCGGCGTGGAGCTGTCCCTGTCCCTGGTGGACGACCGGGCCATCCGCCGGCTCAACCGCACCTGGCG
CAAGAAGGACAAGGCGACGGACGTGCTGAGCTTCCCCGCGGGCGACCTGCCCAAGGGCACGCCTGGACCGCGCCCGCTGG
GGGACGTGGTCATCTCCCTGGACACGGCGAAGCGCCAGGCCAAGGAGTACGGCCGCACGCTGGAGTCGGAGATGGCGCGC
TACCTGGCGCATGGCCTGCTCCACCTGCTGGGGCACGACCACGAGCGCCCCCGGGATGCCAAGCGCATGGCGGCCCTGGA
GGAACAGCTCCTGGGCGAGCGAGGCATGGTGGCGGACTCGCTCCAGGTGGATGCCAAGGCCCGCCGCGCTCGCAGCCTCA
TGTAG

Upstream 100 bases:

>100_bases
CGGGCGCCGTGGGTGGGGGCAAGGCGCCGCCGTTGGTGGTGGCGGGCGCGGTGCCTCGGCCCGCGGAAGGCAAGGACAAG
GCGCGGACCGCGGGGGGCAC

Downstream 100 bases:

>100_bases
GCCCTCCGCCGGCTCCCCGCTGGACAATCCAGTATCCATCCCGTTGAGCCGGGCGGCGTGCGTGATAGGTAGGCGGCCTC
CCGCGTGTTGGACCAAGCCA

Product: cupin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSGARRGNGVRLRKGKLIPRDDGKRIEEFVGAATTSTDSASVARMLAPPGWSEPAQRPEFDEVVIVLTGELTIVVEGRRE
RISAGEVGLVPRGKRVVYRNDGQGACDYWSVCAPAFRPELAHMETPKPRVQENHVTIQVAHGQGRDFARLLTTWARAYLV
QLELSGVELSLSLVDDRAIRRLNRTWRKKDKATDVLSFPAGDLPKGTPGPRPLGDVVISLDTAKRQAKEYGRTLESEMAR
YLAHGLLHLLGHDHERPRDAKRMAALEEQLLGERGMVADSLQVDAKARRARSLM

Sequences:

>Translated_294_residues
MSGARRGNGVRLRKGKLIPRDDGKRIEEFVGAATTSTDSASVARMLAPPGWSEPAQRPEFDEVVIVLTGELTIVVEGRRE
RISAGEVGLVPRGKRVVYRNDGQGACDYWSVCAPAFRPELAHMETPKPRVQENHVTIQVAHGQGRDFARLLTTWARAYLV
QLELSGVELSLSLVDDRAIRRLNRTWRKKDKATDVLSFPAGDLPKGTPGPRPLGDVVISLDTAKRQAKEYGRTLESEMAR
YLAHGLLHLLGHDHERPRDAKRMAALEEQLLGERGMVADSLQVDAKARRARSLM
>Mature_293_residues
SGARRGNGVRLRKGKLIPRDDGKRIEEFVGAATTSTDSASVARMLAPPGWSEPAQRPEFDEVVIVLTGELTIVVEGRRER
ISAGEVGLVPRGKRVVYRNDGQGACDYWSVCAPAFRPELAHMETPKPRVQENHVTIQVAHGQGRDFARLLTTWARAYLVQ
LELSGVELSLSLVDDRAIRRLNRTWRKKDKATDVLSFPAGDLPKGTPGPRPLGDVVISLDTAKRQAKEYGRTLESEMARY
LAHGLLHLLGHDHERPRDAKRMAALEEQLLGERGMVADSLQVDAKARRARSLM

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=121, Percent_Identity=38.8429752066116, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_MYXXD (Q1D375)

Other databases:

- EMBL:   CP000113
- RefSeq:   YP_632898.1
- ProteinModelPortal:   Q1D375
- SMR:   Q1D375
- STRING:   Q1D375
- GeneID:   4104149
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_4736
- TIGR:   MXAN_4736
- eggNOG:   COG0319
- BioCyc:   MXAN246197:MXAN_4736-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR023091
- InterPro:   IPR014710
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- Gene3D:   G3DSA:2.60.120.10
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF07883 Cupin_2; PF02130 UPF0054; SSF51182 RmlC_like_cupin

EC number: NA

Molecular weight: Translated: 32609; Mature: 32478

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGARRGNGVRLRKGKLIPRDDGKRIEEFVGAATTSTDSASVARMLAPPGWSEPAQRPEF
CCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
DEVVIVLTGELTIVVEGRRERISAGEVGLVPRGKRVVYRNDGQGACDYWSVCAPAFRPEL
CCEEEEEECCEEEEECCCHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCHHHCCCH
AHMETPKPRVQENHVTIQVAHGQGRDFARLLTTWARAYLVQLELSGVELSLSLVDDRAIR
HCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHEEEEEECCEEEEEEEHHHHHHH
RLNRTWRKKDKATDVLSFPAGDLPKGTPGPRPLGDVVISLDTAKRQAKEYGRTLESEMAR
HHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
YLAHGLLHLLGHDHERPRDAKRMAALEEQLLGERGMVADSLQVDAKARRARSLM
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGARRGNGVRLRKGKLIPRDDGKRIEEFVGAATTSTDSASVARMLAPPGWSEPAQRPEF
CCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
DEVVIVLTGELTIVVEGRRERISAGEVGLVPRGKRVVYRNDGQGACDYWSVCAPAFRPEL
CCEEEEEECCEEEEECCCHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCHHHCCCH
AHMETPKPRVQENHVTIQVAHGQGRDFARLLTTWARAYLVQLELSGVELSLSLVDDRAIR
HCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHEEEEEECCEEEEEEEHHHHHHH
RLNRTWRKKDKATDVLSFPAGDLPKGTPGPRPLGDVVISLDTAKRQAKEYGRTLESEMAR
HHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
YLAHGLLHLLGHDHERPRDAKRMAALEEQLLGERGMVADSLQVDAKARRARSLM
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA