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The map label for this gene is ylbH [H]

Identifier: 108760564

GI number: 108760564

Start: 3934039

End: 3934596

Strand: Direct

Name: ylbH [H]

Synonym: MXAN_3384

Alternate gene names: 108760564

Gene position: 3934039-3934596 (Clockwise)

Preceding gene: 108761572

Following gene: 108763591

Centisome position: 43.04

GC content: 72.76

Gene sequence:

>558_bases
ATGCGAATCGTCGCAGGCACCGCCAAGGGCCGCGCCCTGGCCGGCCCCAAGTCCTCGTCCCTTCATATCCGTCCCACGGC
CGACCGCGTCCGGGAGACGCTCTTCAACGTGCTGGGCCAGTTCCTGGACGGCCAGCGGGTGCTGGACCTCTACGCCGGCA
CCGGCGCGCTGGGCCTGGAGGCCGTGTCCCGTGGCGCGGGACAGGCGGTGCTGGTGGACCAGGACCGCGAGGCGCTCACC
CTCTGCCGTGAGAACGCGCAGGCCGTGGGGCTCGCCGGGCAGGTGGAGGTGCTGGCCGCGCCGGTGGCCCGGGCGCTGGA
GACGCTGAAGCGGCGGGGCGACCGCTTCGAGCTCATCTTCGCGGACCCGCCGTACGCCGCGCGCGTGGTGGAGACGGTGC
TGGACGGCATCGTGGCCGCCGGGCTGCTGACCCCCTCTGGCATGGTGGTGGTGGAGCACGACAAGCGCGAGGCGGCGCCG
GACACACATGCCGGGCTTGACCGGGAAGACCAGCGCCGCTTCGGGGATACGTTGGTGAGCTTCTATCGGGCGCCGTGA

Upstream 100 bases:

>100_bases
GTACTGGCCGCGCTGGGTGCCACGCGCACGGGGCAGGCGTCACTGCGCTTCCTGGCGGAGAAGCGGGGCGACTGAGGCCG
GAGCGGTGTAGAAGGGGCCC

Downstream 100 bases:

>100_bases
GCAGACCTTGACCGGCTCCCGGGGGCATCCGAGACTTCCCGGCACATGCTGGTCGCCATCTATCCTGGTTCTTTTGATCC
GCTCACCAACGGGCACCTGA

Product: putative methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MRIVAGTAKGRALAGPKSSSLHIRPTADRVRETLFNVLGQFLDGQRVLDLYAGTGALGLEAVSRGAGQAVLVDQDREALT
LCRENAQAVGLAGQVEVLAAPVARALETLKRRGDRFELIFADPPYAARVVETVLDGIVAAGLLTPSGMVVVEHDKREAAP
DTHAGLDREDQRRFGDTLVSFYRAP

Sequences:

>Translated_185_residues
MRIVAGTAKGRALAGPKSSSLHIRPTADRVRETLFNVLGQFLDGQRVLDLYAGTGALGLEAVSRGAGQAVLVDQDREALT
LCRENAQAVGLAGQVEVLAAPVARALETLKRRGDRFELIFADPPYAARVVETVLDGIVAAGLLTPSGMVVVEHDKREAAP
DTHAGLDREDQRRFGDTLVSFYRAP
>Mature_185_residues
MRIVAGTAKGRALAGPKSSSLHIRPTADRVRETLFNVLGQFLDGQRVLDLYAGTGALGLEAVSRGAGQAVLVDQDREALT
LCRENAQAVGLAGQVEVLAAPVARALETLKRRGDRFELIFADPPYAARVVETVLDGIVAAGLLTPSGMVVVEHDKREAAP
DTHAGLDREDQRRFGDTLVSFYRAP

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=183, Percent_Identity=32.7868852459016, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 19772; Mature: 19772

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVAGTAKGRALAGPKSSSLHIRPTADRVRETLFNVLGQFLDGQRVLDLYAGTGALGLE
CEEEECCCCCCEECCCCCCCEEEECCHHHHHHHHHHHHHHHHCCHHEEHHHCCCCHHHHH
AVSRGAGQAVLVDQDREALTLCRENAQAVGLAGQVEVLAAPVARALETLKRRGDRFELIF
HHHCCCCCEEEEECCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
ADPPYAARVVETVLDGIVAAGLLTPSGMVVVEHDKREAAPDTHAGLDREDQRRFGDTLVS
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
FYRAP
HHCCC
>Mature Secondary Structure
MRIVAGTAKGRALAGPKSSSLHIRPTADRVRETLFNVLGQFLDGQRVLDLYAGTGALGLE
CEEEECCCCCCEECCCCCCCEEEECCHHHHHHHHHHHHHHHHCCHHEEHHHCCCCHHHHH
AVSRGAGQAVLVDQDREALTLCRENAQAVGLAGQVEVLAAPVARALETLKRRGDRFELIF
HHHCCCCCEEEEECCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
ADPPYAARVVETVLDGIVAAGLLTPSGMVVVEHDKREAAPDTHAGLDREDQRRFGDTLVS
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
FYRAP
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]