Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 108760438

GI number: 108760438

Start: 2073324

End: 2073962

Strand: Direct

Name: yggS [C]

Synonym: MXAN_1747

Alternate gene names: 108760438

Gene position: 2073324-2073962 (Clockwise)

Preceding gene: 108757415

Following gene: 108758225

Centisome position: 22.68

GC content: 67.45

Gene sequence:

>639_bases
ATGCCCGAGGCCCGCATCCGCATGGCCTACGCGGCTGGCTGCCGCGAACTCGGAGAGAACAAGGTCCAGGAGGCGTTGGG
TAAGGCCGAGGCGATGGCAGATCTCACCGACCTGCGGTGGTCGGTGATCGGGCACCTCCAGACGAACAAAGCGAAGGTCG
TCGCGCGCTTCGCCAGCGAGTTTCAGGCGCTGGACAGCCTTCGTGTCGCGGAGGCGCTCGATCGACGCTTGCAGGTGGAG
GGGCGCGCGCTCGACGTGTTGGTGCAGGTCAACACGTCCGGTGAAGCCAGCAAGTTCGGCCTGCCGCCGGATGAGGTCGC
CCGTTTCTTCCGCGACTTGCCCGCCTTCTCCTCGCTGCGCGTCCGTGGGCTGATGACTCTCGCGCTGCTGTCGGCCGATC
CGGCGCGTGTGCGTCCGTGCTTCACGCTGCTTCGGGAACTGCGCGCGCGGCTGCGTGAGGAGGCGCCGGCTGGCGTCACG
ATGAACGAGCTCTCGATGGGGATGTCCGGCGACTTCGAGTGGGCTGTCGAGGAGGGAGCTACCATCGTGCGCGTGGGACA
GGCGATCTTCGGCCCGCGCGCGCTGCCCGACAGTCACTATTGGCCTGAGCCGAACGCGACCTCAGACCCCACGTCGTAA

Upstream 100 bases:

>100_bases
TCGGCGCAACCTGGCGACTGTTCGCGGACGCATCGCCGCTGCGTGCGCGCGAGTCGGTCGCGATCCAGTAGAGGTCCGCC
TCCTGCCGGTCAGCAAGACC

Downstream 100 bases:

>100_bases
CGACCGTCGAAGCCCCCGCCTCATCCATGCCGAGGGCCTCACGCATGGCCGCGACGCGCTTCGACGGTCATCTGTCGTTC
AAGCGAGCGACATCCGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MPEARIRMAYAAGCRELGENKVQEALGKAEAMADLTDLRWSVIGHLQTNKAKVVARFASEFQALDSLRVAEALDRRLQVE
GRALDVLVQVNTSGEASKFGLPPDEVARFFRDLPAFSSLRVRGLMTLALLSADPARVRPCFTLLRELRARLREEAPAGVT
MNELSMGMSGDFEWAVEEGATIVRVGQAIFGPRALPDSHYWPEPNATSDPTS

Sequences:

>Translated_212_residues
MPEARIRMAYAAGCRELGENKVQEALGKAEAMADLTDLRWSVIGHLQTNKAKVVARFASEFQALDSLRVAEALDRRLQVE
GRALDVLVQVNTSGEASKFGLPPDEVARFFRDLPAFSSLRVRGLMTLALLSADPARVRPCFTLLRELRARLREEAPAGVT
MNELSMGMSGDFEWAVEEGATIVRVGQAIFGPRALPDSHYWPEPNATSDPTS
>Mature_211_residues
PEARIRMAYAAGCRELGENKVQEALGKAEAMADLTDLRWSVIGHLQTNKAKVVARFASEFQALDSLRVAEALDRRLQVEG
RALDVLVQVNTSGEASKFGLPPDEVARFFRDLPAFSSLRVRGLMTLALLSADPARVRPCFTLLRELRARLREEAPAGVTM
NELSMGMSGDFEWAVEEGATIVRVGQAIFGPRALPDSHYWPEPNATSDPTS

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=209, Percent_Identity=38.2775119617225, Blast_Score=118, Evalue=5e-27,
Organism=Escherichia coli, GI1789321, Length=200, Percent_Identity=38, Blast_Score=104, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17533025, Length=202, Percent_Identity=34.1584158415842, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6319435, Length=203, Percent_Identity=35.4679802955665, Blast_Score=105, Evalue=6e-24,
Organism=Drosophila melanogaster, GI45550861, Length=200, Percent_Identity=35.5, Blast_Score=106, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23299; Mature: 23168

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEARIRMAYAAGCRELGENKVQEALGKAEAMADLTDLRWSVIGHLQTNKAKVVARFASE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FQALDSLRVAEALDRRLQVEGRALDVLVQVNTSGEASKFGLPPDEVARFFRDLPAFSSLR
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHH
VRGLMTLALLSADPARVRPCFTLLRELRARLREEAPAGVTMNELSMGMSGDFEWAVEEGA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHCCC
TIVRVGQAIFGPRALPDSHYWPEPNATSDPTS
EEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PEARIRMAYAAGCRELGENKVQEALGKAEAMADLTDLRWSVIGHLQTNKAKVVARFASE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FQALDSLRVAEALDRRLQVEGRALDVLVQVNTSGEASKFGLPPDEVARFFRDLPAFSSLR
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHH
VRGLMTLALLSADPARVRPCFTLLRELRARLREEAPAGVTMNELSMGMSGDFEWAVEEGA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHCCC
TIVRVGQAIFGPRALPDSHYWPEPNATSDPTS
EEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]