Click here to switch to the map view.

The map label for this gene is ytfH [H]

Identifier: 108760403

GI number: 108760403

Start: 6373976

End: 6374392

Strand: Reverse

Name: ytfH [H]

Synonym: MXAN_5099

Alternate gene names: 108760403

Gene position: 6374392-6373976 (Counterclockwise)

Preceding gene: 108757971

Following gene: 108764048

Centisome position: 69.74

GC content: 67.63

Gene sequence:

>417_bases
ATGAGCGCGAACAAGCGTCCGGGGCCGCTGGCGCGGAAGATGGCGAAGTTGGCGGTGGAGCGGGGCAACCTGTACGTGCC
CTCATGTCCTTCGCGAGGCGTGCTGGACCACGTGACGAGCCGTTGGGGCGTCCTGGTCTTGATTGCGCTGCTGGAAGGCA
CGCGTCGCTTCAGTGAGCTGCGCCGGAGGGTGGCGGGCGTGAGCGAGAAGATGCTGTCGCAGACGCTCCAGGCCCTGGAA
CAGGACGGCTTCGTGCTCCGTGAAGTCCACCCGGTGATTCCGCCGCACGTGGACTACAGCCTCACGCCGCTGGGGGAGGA
AGTCGCCGCGCGCGTGGAGGCGCTCGCGGATTGGATTGAGGACAGCATGCCCCGCATCGCCGCGGCGCGGGCCGTGTATA
CCCCAAGGAAGGGATAG

Upstream 100 bases:

>100_bases
GGGTTCACATCTCCTGTCGTGGAGGGTTTTCCAGACGCGAGAGGAACCTAACGATGTCACTAACTTCTAGTAAGTACCCA
CTTTTTGGTAAGCTACTAAC

Downstream 100 bases:

>100_bases
GGGTTTCTTGGCCTGACGCCCTCTCATGGATGGAGAGGACGTCAGGGCATCGCGGGGTCAGCGCTTGCGGCGGGCTCGGC
CCATCAGTGCCAGCGCCGCC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSANKRPGPLARKMAKLAVERGNLYVPSCPSRGVLDHVTSRWGVLVLIALLEGTRRFSELRRRVAGVSEKMLSQTLQALE
QDGFVLREVHPVIPPHVDYSLTPLGEEVAARVEALADWIEDSMPRIAAARAVYTPRKG

Sequences:

>Translated_138_residues
MSANKRPGPLARKMAKLAVERGNLYVPSCPSRGVLDHVTSRWGVLVLIALLEGTRRFSELRRRVAGVSEKMLSQTLQALE
QDGFVLREVHPVIPPHVDYSLTPLGEEVAARVEALADWIEDSMPRIAAARAVYTPRKG
>Mature_137_residues
SANKRPGPLARKMAKLAVERGNLYVPSCPSRGVLDHVTSRWGVLVLIALLEGTRRFSELRRRVAGVSEKMLSQTLQALEQ
DGFVLREVHPVIPPHVDYSLTPLGEEVAARVEALADWIEDSMPRIAAARAVYTPRKG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=112, Percent_Identity=66.0714285714286, Blast_Score=164, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15267; Mature: 15136

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANKRPGPLARKMAKLAVERGNLYVPSCPSRGVLDHVTSRWGVLVLIALLEGTRRFSEL
CCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRVAGVSEKMLSQTLQALEQDGFVLREVHPVIPPHVDYSLTPLGEEVAARVEALADWIE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
DSMPRIAAARAVYTPRKG
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SANKRPGPLARKMAKLAVERGNLYVPSCPSRGVLDHVTSRWGVLVLIALLEGTRRFSEL
CCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRVAGVSEKMLSQTLQALEQDGFVLREVHPVIPPHVDYSLTPLGEEVAARVEALADWIE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
DSMPRIAAARAVYTPRKG
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]