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The map label for this gene is 108760312

Identifier: 108760312

GI number: 108760312

Start: 6733475

End: 6734737

Strand: Reverse

Name: 108760312

Synonym: MXAN_5410

Alternate gene names: NA

Gene position: 6734737-6733475 (Counterclockwise)

Preceding gene: 108763606

Following gene: 108759766

Centisome position: 73.69

GC content: 71.65

Gene sequence:

>1263_bases
GTGATGACGGAGTCGAGGGACATTCGCATCGAGCACCTGTTGCGCGAACACGCGCCGCGGGTGCTCGGCGCGGTCATCCG
GCGGTTTCGGGACTTCGGAGCCTCGGAGGACGCGGTGCAGGAAGCGCTGCTCGCGGCGGCCTTGCAGTGGCCTCGCGAGG
GCGTGCCGGACGACCCGCGCGCCTGGCTGATTCAGGTCGCCTCGCGGCGAATCACGGACCACGTGCGCGCGGAGACCGCG
CGCCGCCACCGTGAGGAGCTGGTGGTCAGCCTGGTGCCGCCGGAGCTCCAGCTCGTGATGTCCCTGGATGGCGACGAGCT
GGCGGGCCGGGATGACGCGCTCGTGCTGCTGTTCATGTGCTGTCACCCGGCGCTGTCCACGGCGTCGGCCATCGCGCTGA
CCTTGCGCGCGGTGGGCGGGTTGACGACGGCGGAAATCGCCAAGGCCTTCCTCGTGCCCGAGGCGACCATGGCCCAGCGC
ATCAGCCGGGCCAAGCAGAGCATCAAGAGCTCCGGGATTCCGTTCCAGAAGCCCACGCCGGAGGAGAGCGCGCAGCGGCT
GGGCGCGGTGCTGCACGTGCTCTACCTCATCTTCAACGAGGGCTACACGGCCACCTCGGGGCCGGAGTTGCATCGCACGG
ACCTGTCGGGCGAGGCGATTCGGCTGACGCGGATGTTGCACACGCTGCTGCCGGAGGACGGCGAGGTGGCGGGGCTGTTG
GCGCTGATGCTGCTCACGGACGCGCGGAGGGCGGCGAGGACGGGGCCCGCGGGTGAGCTGATTCCGCTCGACGCGCAGGA
CCGGAGCCTGTGGGACGCGGGGATGATTGCGGAGGGCATCGCGCTCATCTCCGCGACGCTGTCGAGGGGCTCGGTGGGGA
TGTACCAGGTGCAGGCGGCCATCGCGGCGGTGCATGACGAGGCGTCGCGCGCGGAGGACACGGACTGGCCGCAGGTGCTG
GCGCTCTACGGGGTGCTGATGGGGCTGATGGACAACCCGATGGTGGCGCTCAACCACGCCATCGCGACGGCGATGGTGCA
CGGGCCGCAGGCCGGGCTGTCGCTGCTGGAGGGGCTGGCCAGGGAGGGCCGGCTGGAGGGGAACCACCGGCTCGACGCCG
TGCGCGCGCACCTGCTGGAGCGCGCGGGGAAGACGGGCGCGGCGGTGGTCCACTACCGGAAGGCGGCCGAGCGCACCACG
AGCCTGCCCGAGCGCGACTACCTGCTGACCCAGGCCGCGCGGCTGAGCGACGAGATGGCGTAG

Upstream 100 bases:

>100_bases
TCGCCGCGGAGGCCTCAGCGGCGCCTGGGCTCGGCGGCAAGCCGATGAACATGCCCATCGAGGTCCGCCAGGTGATGAGC
GGTCCTCCGCCCGACCTGAT

Downstream 100 bases:

>100_bases
GCCCCCGAGCGCCGCGCGCTACTTCGCCGTGGCCGACGCCGCGCCGAGCTCGCGCAACTTCTTCACGGCGTTGTCGTTCT
TCGGGTTCAGCTCCAGCGAC

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MMTESRDIRIEHLLREHAPRVLGAVIRRFRDFGASEDAVQEALLAAALQWPREGVPDDPRAWLIQVASRRITDHVRAETA
RRHREELVVSLVPPELQLVMSLDGDELAGRDDALVLLFMCCHPALSTASAIALTLRAVGGLTTAEIAKAFLVPEATMAQR
ISRAKQSIKSSGIPFQKPTPEESAQRLGAVLHVLYLIFNEGYTATSGPELHRTDLSGEAIRLTRMLHTLLPEDGEVAGLL
ALMLLTDARRAARTGPAGELIPLDAQDRSLWDAGMIAEGIALISATLSRGSVGMYQVQAAIAAVHDEASRAEDTDWPQVL
ALYGVLMGLMDNPMVALNHAIATAMVHGPQAGLSLLEGLAREGRLEGNHRLDAVRAHLLERAGKTGAAVVHYRKAAERTT
SLPERDYLLTQAARLSDEMA

Sequences:

>Translated_420_residues
MMTESRDIRIEHLLREHAPRVLGAVIRRFRDFGASEDAVQEALLAAALQWPREGVPDDPRAWLIQVASRRITDHVRAETA
RRHREELVVSLVPPELQLVMSLDGDELAGRDDALVLLFMCCHPALSTASAIALTLRAVGGLTTAEIAKAFLVPEATMAQR
ISRAKQSIKSSGIPFQKPTPEESAQRLGAVLHVLYLIFNEGYTATSGPELHRTDLSGEAIRLTRMLHTLLPEDGEVAGLL
ALMLLTDARRAARTGPAGELIPLDAQDRSLWDAGMIAEGIALISATLSRGSVGMYQVQAAIAAVHDEASRAEDTDWPQVL
ALYGVLMGLMDNPMVALNHAIATAMVHGPQAGLSLLEGLAREGRLEGNHRLDAVRAHLLERAGKTGAAVVHYRKAAERTT
SLPERDYLLTQAARLSDEMA
>Mature_420_residues
MMTESRDIRIEHLLREHAPRVLGAVIRRFRDFGASEDAVQEALLAAALQWPREGVPDDPRAWLIQVASRRITDHVRAETA
RRHREELVVSLVPPELQLVMSLDGDELAGRDDALVLLFMCCHPALSTASAIALTLRAVGGLTTAEIAKAFLVPEATMAQR
ISRAKQSIKSSGIPFQKPTPEESAQRLGAVLHVLYLIFNEGYTATSGPELHRTDLSGEAIRLTRMLHTLLPEDGEVAGLL
ALMLLTDARRAARTGPAGELIPLDAQDRSLWDAGMIAEGIALISATLSRGSVGMYQVQAAIAAVHDEASRAEDTDWPQVL
ALYGVLMGLMDNPMVALNHAIATAMVHGPQAGLSLLEGLAREGRLEGNHRLDAVRAHLLERAGKTGAAVVHYRKAAERTT
SLPERDYLLTQAARLSDEMA

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 45589; Mature: 45589

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTESRDIRIEHLLREHAPRVLGAVIRRFRDFGASEDAVQEALLAAALQWPREGVPDDPR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHH
AWLIQVASRRITDHVRAETARRHREELVVSLVPPELQLVMSLDGDELAGRDDALVLLFMC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
CHPALSTASAIALTLRAVGGLTTAEIAKAFLVPEATMAQRISRAKQSIKSSGIPFQKPTP
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
EESAQRLGAVLHVLYLIFNEGYTATSGPELHRTDLSGEAIRLTRMLHTLLPEDGEVAGLL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
ALMLLTDARRAARTGPAGELIPLDAQDRSLWDAGMIAEGIALISATLSRGSVGMYQVQAA
HHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IAAVHDEASRAEDTDWPQVLALYGVLMGLMDNPMVALNHAIATAMVHGPQAGLSLLEGLA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
REGRLEGNHRLDAVRAHLLERAGKTGAAVVHYRKAAERTTSLPERDYLLTQAARLSDEMA
HHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMTESRDIRIEHLLREHAPRVLGAVIRRFRDFGASEDAVQEALLAAALQWPREGVPDDPR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHH
AWLIQVASRRITDHVRAETARRHREELVVSLVPPELQLVMSLDGDELAGRDDALVLLFMC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
CHPALSTASAIALTLRAVGGLTTAEIAKAFLVPEATMAQRISRAKQSIKSSGIPFQKPTP
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
EESAQRLGAVLHVLYLIFNEGYTATSGPELHRTDLSGEAIRLTRMLHTLLPEDGEVAGLL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
ALMLLTDARRAARTGPAGELIPLDAQDRSLWDAGMIAEGIALISATLSRGSVGMYQVQAA
HHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IAAVHDEASRAEDTDWPQVLALYGVLMGLMDNPMVALNHAIATAMVHGPQAGLSLLEGLA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
REGRLEGNHRLDAVRAHLLERAGKTGAAVVHYRKAAERTTSLPERDYLLTQAARLSDEMA
HHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]