| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is 108760215
Identifier: 108760215
GI number: 108760215
Start: 709919
End: 711979
Strand: Direct
Name: 108760215
Synonym: MXAN_0613
Alternate gene names: NA
Gene position: 709919-711979 (Clockwise)
Preceding gene: 108758532
Following gene: 108758413
Centisome position: 7.77
GC content: 70.21
Gene sequence:
>2061_bases ATGCGCACCCACTTCGTCCGGCATCTGCTGGCGCTTTCGCTCGTGCTTGCGACGGGCGCCCAGGCGGCCAGCCAGCCCTG GCGGACCTCCCCTCATCCGGAGTCCTCCGCGTCCGGCCTGACGGGCGCGTGCGAAGACGCGCGGGACTTCCTGCTGGGCG CGGGCAGCGCCGACATCACCGGCCCCGCCGCCGAGGTGGGGATGATGGGCTACGGCATGCTGGAACAGCAGACCACCGGC ATCCACCAGCGGCTGCACTCGCGCGCGTTCGTCATCGCCTCGCCCTGCAATGGTAAGCGGGTGGCCTTCGTCAGCGCGGA CCTGGGCATGGTGTTCCAGGCGGTGAAGCAGCAGGTCGTGGAGCGGCTGCGCGCGCGTTATGGCGACCTGTACACCGACG ACAACGTGCTGCTGAGCGCCACCCACACCCACTCCGGGCCCGGGGGCTATTCGCACTACACCCTCTACAACCTCACCACG CTGGGCTTCTCGCCGCAGAACTTCGAGGCCATCGTCTCCGGCATCGTCGCCTCCATCGTTCGGGCGCATGAGCGGCTCGC CGAGGGCACGCTGCGCCTGTCGTCGGGGGAGTTGTTCGGGGCCAGCCGCAACCGCTCCCCCAACGCCTACCTGCTCAACC CGGCCGAGGAGCGCGCCCGCTACGCGCACGACGTGGACACGCGGATGACGCTGCTGCGCCTCACTCGTGCGGATGGCACC GACATGGGGCTCATCAACTGGTTCGCGGTGCACGCCACGTCCATGGGCAACGGCAACACGCTCATCAGTGGCGACAACAA GGGCCTGGCCTCGTACCTCGCCGAGCAGGCGCAGGGGGCCGGGGACACGTTCGTCGCCGCATTCGCCAACGCGAACGAGG GCGACGTGACGCCCAACATCCTGGGAGGCACCCACGGCGGCGGTGCCAATGACTTCGAGGACACGGACCTCTCCGGTCGC AAGCAGTACGACTTCGCCGCGAAGCTGTGGGCGGAGGCGAAGACGCCGCTCACGGGCGGCGTGGACTACCGGCACGTCTA CGTGAAGATGGACGCGGTGGACGTGGCGCCAGCCTTCGCGGACGGGGCGCCGCGAACCACCTGCCCGGCCGCCATCGGCG TGTCCATGCTGGCAGGGGCGGAGGACGGGCCGGGCGTCGGCGTGGAGGGCGTCACTTGCGCCGCCGGCCAGAATGCCTGG GGGCAGTTCAGTTGCTCGCTCGCCACCACGCCGTGTCAGGCGGAGAAGCCCATCGTCCTGGAGATGGGCAGCATGCGGCC CTTCCCGTGGACGCCGGAGGTGCTGCCCCTGCAACTGGTCACCATCGGCAACCTGGCGCTGGTGGCGGTGCCCTTCGAGC TGACGACCATGGCCGGACGCCGCCTGCGCGACACCGTGGAGACGGCGCTGGCGCCCGCGGGCGTGACGGACGTCGTCATC GCGGGCCTGTCCAATGCCTATTCGGGCTACGTGGCCACCCGCGAGGAGTACGCGCGTCAGGACTACGAAGGTGCTTCCAC GCACTTCGGCCCGTGGACGCTCGCGGCCCTCCAACAGAACTTCCACCTGCTGGCCACGTCGCTGCGGGACGGCGCCGGTG TGCCTCCCGGGCCCACGCCCAGGGACCTGCGCAAGGAGCAGCTCAGCCTGCAACCCGGCGTGGTGTTCGACGACAAGCTC TTGTGGGTGGACTTCGGCGAGGTCGTCACCGACGCGCGGCCCACGTACTCGCGCGGCGACACGGCGAGCGCCACCTTCTG GGGCGGGCATCCCAAGAATGACCTGCGCCTGGAGGGCACCTTCCTGCGCGTGCAGCGGCGCGAGCCGGACGGCACCTGGA CGGACGTGGCCACCGACGCGGACCCGGCCACGCGCTACCAGTGGCGGCGCGAGAACTGCGTGCCCACGTTGGCGTGCTCC CACGTCACCGTGACGTGGGGCATCCCCGACGACACGGTGCCGGGCACGTACCGGCTCGTCCACGAAGGCAACTGGAAGTC GGGCTGGGACGGCAATGTGCGGCCCTACTCCGGTGCCTCACGGACCTTCACGGTGAAGTGA
Upstream 100 bases:
>100_bases AGCCCTCTCGACGGCTCGTTCTTCCGGTACTGCGCGCCCGCCCTGAAGCGTTATCCACTTCCACCCCAGGGGATGTCCCC TGGCGCCTTGGAGGCAGGCC
Downstream 100 bases:
>100_bases CGCGCGGCCCGCGTCACAGCACCACCTCCGCGCGCATCAACGTGGACGCGGGTGTGGTCAGCCGGTGGGGCTGCACGCGG CGGATGAGCTCGCACAGCCG
Product: alkaline ceramidase
Products: NA
Alternate protein names: N-CDase; NCDase; Acylsphingosine deacylase; N-acylsphingosine amidohydrolase [H]
Number of amino acids: Translated: 686; Mature: 686
Protein sequence:
>686_residues MRTHFVRHLLALSLVLATGAQAASQPWRTSPHPESSASGLTGACEDARDFLLGAGSADITGPAAEVGMMGYGMLEQQTTG IHQRLHSRAFVIASPCNGKRVAFVSADLGMVFQAVKQQVVERLRARYGDLYTDDNVLLSATHTHSGPGGYSHYTLYNLTT LGFSPQNFEAIVSGIVASIVRAHERLAEGTLRLSSGELFGASRNRSPNAYLLNPAEERARYAHDVDTRMTLLRLTRADGT DMGLINWFAVHATSMGNGNTLISGDNKGLASYLAEQAQGAGDTFVAAFANANEGDVTPNILGGTHGGGANDFEDTDLSGR KQYDFAAKLWAEAKTPLTGGVDYRHVYVKMDAVDVAPAFADGAPRTTCPAAIGVSMLAGAEDGPGVGVEGVTCAAGQNAW GQFSCSLATTPCQAEKPIVLEMGSMRPFPWTPEVLPLQLVTIGNLALVAVPFELTTMAGRRLRDTVETALAPAGVTDVVI AGLSNAYSGYVATREEYARQDYEGASTHFGPWTLAALQQNFHLLATSLRDGAGVPPGPTPRDLRKEQLSLQPGVVFDDKL LWVDFGEVVTDARPTYSRGDTASATFWGGHPKNDLRLEGTFLRVQRREPDGTWTDVATDADPATRYQWRRENCVPTLACS HVTVTWGIPDDTVPGTYRLVHEGNWKSGWDGNVRPYSGASRTFTVK
Sequences:
>Translated_686_residues MRTHFVRHLLALSLVLATGAQAASQPWRTSPHPESSASGLTGACEDARDFLLGAGSADITGPAAEVGMMGYGMLEQQTTG IHQRLHSRAFVIASPCNGKRVAFVSADLGMVFQAVKQQVVERLRARYGDLYTDDNVLLSATHTHSGPGGYSHYTLYNLTT LGFSPQNFEAIVSGIVASIVRAHERLAEGTLRLSSGELFGASRNRSPNAYLLNPAEERARYAHDVDTRMTLLRLTRADGT DMGLINWFAVHATSMGNGNTLISGDNKGLASYLAEQAQGAGDTFVAAFANANEGDVTPNILGGTHGGGANDFEDTDLSGR KQYDFAAKLWAEAKTPLTGGVDYRHVYVKMDAVDVAPAFADGAPRTTCPAAIGVSMLAGAEDGPGVGVEGVTCAAGQNAW GQFSCSLATTPCQAEKPIVLEMGSMRPFPWTPEVLPLQLVTIGNLALVAVPFELTTMAGRRLRDTVETALAPAGVTDVVI AGLSNAYSGYVATREEYARQDYEGASTHFGPWTLAALQQNFHLLATSLRDGAGVPPGPTPRDLRKEQLSLQPGVVFDDKL LWVDFGEVVTDARPTYSRGDTASATFWGGHPKNDLRLEGTFLRVQRREPDGTWTDVATDADPATRYQWRRENCVPTLACS HVTVTWGIPDDTVPGTYRLVHEGNWKSGWDGNVRPYSGASRTFTVK >Mature_686_residues MRTHFVRHLLALSLVLATGAQAASQPWRTSPHPESSASGLTGACEDARDFLLGAGSADITGPAAEVGMMGYGMLEQQTTG IHQRLHSRAFVIASPCNGKRVAFVSADLGMVFQAVKQQVVERLRARYGDLYTDDNVLLSATHTHSGPGGYSHYTLYNLTT LGFSPQNFEAIVSGIVASIVRAHERLAEGTLRLSSGELFGASRNRSPNAYLLNPAEERARYAHDVDTRMTLLRLTRADGT DMGLINWFAVHATSMGNGNTLISGDNKGLASYLAEQAQGAGDTFVAAFANANEGDVTPNILGGTHGGGANDFEDTDLSGR KQYDFAAKLWAEAKTPLTGGVDYRHVYVKMDAVDVAPAFADGAPRTTCPAAIGVSMLAGAEDGPGVGVEGVTCAAGQNAW GQFSCSLATTPCQAEKPIVLEMGSMRPFPWTPEVLPLQLVTIGNLALVAVPFELTTMAGRRLRDTVETALAPAGVTDVVI AGLSNAYSGYVATREEYARQDYEGASTHFGPWTLAALQQNFHLLATSLRDGAGVPPGPTPRDLRKEQLSLQPGVVFDDKL LWVDFGEVVTDARPTYSRGDTASATFWGGHPKNDLRLEGTFLRVQRREPDGTWTDVATDADPATRYQWRRENCVPTLACS HVTVTWGIPDDTVPGTYRLVHEGNWKSGWDGNVRPYSGASRTFTVK
Specific function: Hydrolyzes the ceramides into sphingosine and free fatty acid at an optimal pH of 8-9 [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the neutral ceramidase family [H]
Homologues:
Organism=Homo sapiens, GI221218981, Length=696, Percent_Identity=38.6494252873563, Blast_Score=445, Evalue=1e-125, Organism=Homo sapiens, GI221307475, Length=668, Percent_Identity=38.622754491018, Blast_Score=425, Evalue=1e-119, Organism=Homo sapiens, GI118442845, Length=103, Percent_Identity=37.8640776699029, Blast_Score=67, Evalue=5e-11, Organism=Drosophila melanogaster, GI24651405, Length=685, Percent_Identity=37.6642335766423, Blast_Score=436, Evalue=1e-122, Organism=Drosophila melanogaster, GI24651403, Length=685, Percent_Identity=37.6642335766423, Blast_Score=436, Evalue=1e-122, Organism=Drosophila melanogaster, GI24651401, Length=685, Percent_Identity=37.6642335766423, Blast_Score=436, Evalue=1e-122, Organism=Drosophila melanogaster, GI24651397, Length=685, Percent_Identity=37.6642335766423, Blast_Score=436, Evalue=1e-122, Organism=Drosophila melanogaster, GI24651399, Length=685, Percent_Identity=37.6642335766423, Blast_Score=436, Evalue=1e-122,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006823 [H]
Pfam domain/function: NA
EC number: =3.5.1.23 [H]
Molecular weight: Translated: 73583; Mature: 73583
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTHFVRHLLALSLVLATGAQAASQPWRTSPHPESSASGLTGACEDARDFLLGAGSADIT CCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHEEECCCCCCC GPAAEVGMMGYGMLEQQTTGIHQRLHSRAFVIASPCNGKRVAFVSADLGMVFQAVKQQVV CCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHH ERLRARYGDLYTDDNVLLSATHTHSGPGGYSHYTLYNLTTLGFSPQNFEAIVSGIVASIV HHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHH RAHERLAEGTLRLSSGELFGASRNRSPNAYLLNPAEERARYAHDVDTRMTLLRLTRADGT HHHHHHHHCEEEEECCCEECCCCCCCCCEEEECCHHHHHHHHHHHHHHEEEEEEECCCCC DMGLINWFAVHATSMGNGNTLISGDNKGLASYLAEQAQGAGDTFVAAFANANEGDVTPNI CCCHHEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC LGGTHGGGANDFEDTDLSGRKQYDFAAKLWAEAKTPLTGGVDYRHVYVKMDAVDVAPAFA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCHHC DGAPRTTCPAAIGVSMLAGAEDGPGVGVEGVTCAAGQNAWGQFSCSLATTPCQAEKPIVL CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCEEE EMGSMRPFPWTPEVLPLQLVTIGNLALVAVPFELTTMAGRRLRDTVETALAPAGVTDVVI EECCCCCCCCCCCCCEEEEEEECCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHH AGLSNAYSGYVATREEYARQDYEGASTHFGPWTLAALQQNFHLLATSLRDGAGVPPGPTP HHHHHHHCCCEECHHHHHHCCCCCCCCCCCCCHHHHHHHCHHEEEHHHCCCCCCCCCCCH RDLRKEQLSLQPGVVFDDKLLWVDFGEVVTDARPTYSRGDTASATFWGGHPKNDLRLEGT HHHHHHHHCCCCCEEECCEEEEEEHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEE FLRVQRREPDGTWTDVATDADPATRYQWRRENCVPTLACSHVTVTWGIPDDTVPGTYRLV EEEEEECCCCCCEEECCCCCCCHHHHHHHHCCCCCEEEECEEEEEECCCCCCCCCCEEEE HEGNWKSGWDGNVRPYSGASRTFTVK ECCCCCCCCCCCCCCCCCCCCEEEEC >Mature Secondary Structure MRTHFVRHLLALSLVLATGAQAASQPWRTSPHPESSASGLTGACEDARDFLLGAGSADIT CCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHEEECCCCCCC GPAAEVGMMGYGMLEQQTTGIHQRLHSRAFVIASPCNGKRVAFVSADLGMVFQAVKQQVV CCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHH ERLRARYGDLYTDDNVLLSATHTHSGPGGYSHYTLYNLTTLGFSPQNFEAIVSGIVASIV HHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHH RAHERLAEGTLRLSSGELFGASRNRSPNAYLLNPAEERARYAHDVDTRMTLLRLTRADGT HHHHHHHHCEEEEECCCEECCCCCCCCCEEEECCHHHHHHHHHHHHHHEEEEEEECCCCC DMGLINWFAVHATSMGNGNTLISGDNKGLASYLAEQAQGAGDTFVAAFANANEGDVTPNI CCCHHEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC LGGTHGGGANDFEDTDLSGRKQYDFAAKLWAEAKTPLTGGVDYRHVYVKMDAVDVAPAFA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCHHC DGAPRTTCPAAIGVSMLAGAEDGPGVGVEGVTCAAGQNAWGQFSCSLATTPCQAEKPIVL CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCEEE EMGSMRPFPWTPEVLPLQLVTIGNLALVAVPFELTTMAGRRLRDTVETALAPAGVTDVVI EECCCCCCCCCCCCCEEEEEEECCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHH AGLSNAYSGYVATREEYARQDYEGASTHFGPWTLAALQQNFHLLATSLRDGAGVPPGPTP HHHHHHHCCCEECHHHHHHCCCCCCCCCCCCCHHHHHHHCHHEEEHHHCCCCCCCCCCCH RDLRKEQLSLQPGVVFDDKLLWVDFGEVVTDARPTYSRGDTASATFWGGHPKNDLRLEGT HHHHHHHHCCCCCEEECCEEEEEEHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEE FLRVQRREPDGTWTDVATDADPATRYQWRRENCVPTLACSHVTVTWGIPDDTVPGTYRLV EEEEEECCCCCCEEECCCCCCCHHHHHHHHCCCCCEEEECEEEEEECCCCCCCCCCEEEE HEGNWKSGWDGNVRPYSGASRTFTVK ECCCCCCCCCCCCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10593963; 10984043 [H]