Click here to switch to the map view.

The map label for this gene is algU [H]

Identifier: 108760026

GI number: 108760026

Start: 2361272

End: 2361871

Strand: Reverse

Name: algU [H]

Synonym: MXAN_2030

Alternate gene names: 108760026

Gene position: 2361871-2361272 (Counterclockwise)

Preceding gene: 108758528

Following gene: 108760044

Centisome position: 25.84

GC content: 67.33

Gene sequence:

>600_bases
GTGTCCGGTGTTCCCGCCCAGGACGAGGTGCGGCTCCAGGCACTGGTCCGGCGCATCCAGGAGGGCGACCTGACGGCATT
CGAACAGCTCTATGCGCTCACGCAGGCGGATGCCTCGCGCACCTTGTGGCACCTGGTCGGCAACCGCGTGGACGTGGAGG
ACCTGCTCCAGGAGGCCTATCTCCGGCTGCTGACAGCCGTGAAGAGCTACCGGGGCGAGTCCCGGTTCCGGACTTTCTTC
TATCGCGTGTGCTCCAACGTGGCCCTGTCCCACCTGCGCTGGAAGCGGCGCCGGCCTGAGGACTCCGTCTGGGACCTGCC
GGAAGCGGTGGCGGAGGGAGACGACCCCGAGCGGGTGGCCTCGCGGCGTCAAGCGGCCCGGCTGGTGGAGCTGGCGCTGG
AACGGCTGAAGCCAAAGAAGCGCATCGTCTTCGTGTACTACGAGCTGTGTGGAATGAGTCCGGACGAGATTGCCGACGCC
GTGGGCAGCTCCCCCAACACCGTCCGCAGCCGCCTCCACCATGCGCGGCTGGAGTTCAACGAAGCCATGCAACGACTGCT
CGGCGCCAACCGGTCCGGAGGTTTCCATGGCGCGACATGA

Upstream 100 bases:

>100_bases
ACCCCGACCACCCATCGAGGGAGAACCCCTGGTGTTCCTGCGTGGAGCCCGCTCATTCGCGCACGTCACCCACCTCCCCG
AGGAGCGAAAGGGACGCGAC

Downstream 100 bases:

>100_bases
GCACCTCTCCCTGTGGGCCCTGGCCGCGGGCGAGTTGGACGCAGATGCGAGCGGACGGGTGGAAGCGCACGTCGCCACCT
GCTCCGAATGTGCCCAGGCG

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSGVPAQDEVRLQALVRRIQEGDLTAFEQLYALTQADASRTLWHLVGNRVDVEDLLQEAYLRLLTAVKSYRGESRFRTFF
YRVCSNVALSHLRWKRRRPEDSVWDLPEAVAEGDDPERVASRRQAARLVELALERLKPKKRIVFVYYELCGMSPDEIADA
VGSSPNTVRSRLHHARLEFNEAMQRLLGANRSGGFHGAT

Sequences:

>Translated_199_residues
MSGVPAQDEVRLQALVRRIQEGDLTAFEQLYALTQADASRTLWHLVGNRVDVEDLLQEAYLRLLTAVKSYRGESRFRTFF
YRVCSNVALSHLRWKRRRPEDSVWDLPEAVAEGDDPERVASRRQAARLVELALERLKPKKRIVFVYYELCGMSPDEIADA
VGSSPNTVRSRLHHARLEFNEAMQRLLGANRSGGFHGAT
>Mature_198_residues
SGVPAQDEVRLQALVRRIQEGDLTAFEQLYALTQADASRTLWHLVGNRVDVEDLLQEAYLRLLTAVKSYRGESRFRTFFY
RVCSNVALSHLRWKRRRPEDSVWDLPEAVAEGDDPERVASRRQAARLVELALERLKPKKRIVFVYYELCGMSPDEIADAV
GSSPNTVRSRLHHARLEFNEAMQRLLGANRSGGFHGAT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=183, Percent_Identity=32.7868852459016, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22725; Mature: 22594

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVPAQDEVRLQALVRRIQEGDLTAFEQLYALTQADASRTLWHLVGNRVDVEDLLQEAY
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LRLLTAVKSYRGESRFRTFFYRVCSNVALSHLRWKRRRPEDSVWDLPEAVAEGDDPERVA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHH
SRRQAARLVELALERLKPKKRIVFVYYELCGMSPDEIADAVGSSPNTVRSRLHHARLEFN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
EAMQRLLGANRSGGFHGAT
HHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SGVPAQDEVRLQALVRRIQEGDLTAFEQLYALTQADASRTLWHLVGNRVDVEDLLQEAY
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LRLLTAVKSYRGESRFRTFFYRVCSNVALSHLRWKRRRPEDSVWDLPEAVAEGDDPERVA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHH
SRRQAARLVELALERLKPKKRIVFVYYELCGMSPDEIADAVGSSPNTVRSRLHHARLEFN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
EAMQRLLGANRSGGFHGAT
HHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]