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The map label for this gene is 108760002

Identifier: 108760002

GI number: 108760002

Start: 2524257

End: 2525123

Strand: Reverse

Name: 108760002

Synonym: MXAN_2184

Alternate gene names: NA

Gene position: 2525123-2524257 (Counterclockwise)

Preceding gene: 108761722

Following gene: 108763838

Centisome position: 27.63

GC content: 68.05

Gene sequence:

>867_bases
GTGAATCCCGCTGACGCCTTCGACCCGCTGCGCCCCCGCTTGCTCCGCATCGCCTACCGGATGCTGGGCATCGTCGCGGA
GGCAGAGGACGTGGTGCAGGAGGCGTACTTGCGCTGGCACCAGACCGACCGCGCCGCCGTGCGCGACGCCGAAGCCGTGC
TTGTCCGCACGGTGACACGGTTGTGTCTGGACGTCCTGAAGTCCGCCCGCGTACGCCGCGAGGAATACGTGGGCACCTGG
CTTCCGGAGCCCATCGTCGATGCGGTGGAGGGTGATGACTTGACCCTGCCCCTGATGATGGCCCTGGAGCGGCTGTCCCC
TCTGGAGCGAGCCGCCTTCCTCCTGCACGACGTGTTCGGCATGGACTTCGAGGAGGTGGCGAAGGCCATGGGTCGGGCCC
CTGCCGCGTGCCGCCAGCTCGCCAGCCGCGCACGGGCCCACGTGCGCGAGGCTCGGCCGCGATTTCCCGTGTCGGAAGCA
CAAGGCAGTGAGCTGGCCTCGGCCTTCTACGCCGCGTCCCGGAGCGGGGACATGGGCGCGCTCCAGGCGCTCCTGGCCCA
GGACGTCGTCGTGTACTCTGATGGTGGCGGCAAGGTGAAGGCGGCCCTCAACCCCATCTACGGTCAGGAGAAGACGGTGC
GCTTCTTCGAGGGCTTGCTGCGCATCACGGGCGTGAACGCCTCGCAGCTTGTGCACGAGGGATTCATCGACGGACTGCCC
GCCTTCGTCACCCTGGAGAAGGACGGCACGCTCCAGACGACGGCCCTGGACATCGAAGATGGCCGAGTCGCCACAATCTA
CGTCACTCGCAACCCCGACAAGCTCCAGGGTATCCGCGGGCTCGTGGGGGACAAGCTGCCGTCCTGA

Upstream 100 bases:

>100_bases
CTCACACTGCTCATCGGGATGATCAACACCTGGAACCGCATCTCCGTGGGGTTCCGCTCCATTCACCCCGTCACCACTCC
CCGCACCGAGGCCGCCTGAC

Downstream 100 bases:

>100_bases
CATAGGCCACGGGTTCAGGCGTTCGTTCAAGGCGCGACGAAGCACGCCTGGATGCGCCCGGCGTCTGTCCATTCGCTCGC
TTCGGCAGGAATACCGCGTT

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; ECF-Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase; Sigma-70 Factor; ECF-Family Protein RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70-Like Factor

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MNPADAFDPLRPRLLRIAYRMLGIVAEAEDVVQEAYLRWHQTDRAAVRDAEAVLVRTVTRLCLDVLKSARVRREEYVGTW
LPEPIVDAVEGDDLTLPLMMALERLSPLERAAFLLHDVFGMDFEEVAKAMGRAPAACRQLASRARAHVREARPRFPVSEA
QGSELASAFYAASRSGDMGALQALLAQDVVVYSDGGGKVKAALNPIYGQEKTVRFFEGLLRITGVNASQLVHEGFIDGLP
AFVTLEKDGTLQTTALDIEDGRVATIYVTRNPDKLQGIRGLVGDKLPS

Sequences:

>Translated_288_residues
MNPADAFDPLRPRLLRIAYRMLGIVAEAEDVVQEAYLRWHQTDRAAVRDAEAVLVRTVTRLCLDVLKSARVRREEYVGTW
LPEPIVDAVEGDDLTLPLMMALERLSPLERAAFLLHDVFGMDFEEVAKAMGRAPAACRQLASRARAHVREARPRFPVSEA
QGSELASAFYAASRSGDMGALQALLAQDVVVYSDGGGKVKAALNPIYGQEKTVRFFEGLLRITGVNASQLVHEGFIDGLP
AFVTLEKDGTLQTTALDIEDGRVATIYVTRNPDKLQGIRGLVGDKLPS
>Mature_288_residues
MNPADAFDPLRPRLLRIAYRMLGIVAEAEDVVQEAYLRWHQTDRAAVRDAEAVLVRTVTRLCLDVLKSARVRREEYVGTW
LPEPIVDAVEGDDLTLPLMMALERLSPLERAAFLLHDVFGMDFEEVAKAMGRAPAACRQLASRARAHVREARPRFPVSEA
QGSELASAFYAASRSGDMGALQALLAQDVVVYSDGGGKVKAALNPIYGQEKTVRFFEGLLRITGVNASQLVHEGFIDGLP
AFVTLEKDGTLQTTALDIEDGRVATIYVTRNPDKLQGIRGLVGDKLPS

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31616; Mature: 31616

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPADAFDPLRPRLLRIAYRMLGIVAEAEDVVQEAYLRWHQTDRAAVRDAEAVLVRTVTR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LCLDVLKSARVRREEYVGTWLPEPIVDAVEGDDLTLPLMMALERLSPLERAAFLLHDVFG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHC
MDFEEVAKAMGRAPAACRQLASRARAHVREARPRFPVSEAQGSELASAFYAASRSGDMGA
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
LQALLAQDVVVYSDGGGKVKAALNPIYGQEKTVRFFEGLLRITGVNASQLVHEGFIDGLP
HHHHHHCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
AFVTLEKDGTLQTTALDIEDGRVATIYVTRNPDKLQGIRGLVGDKLPS
EEEEEECCCCEEEEEEEECCCEEEEEEEECCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNPADAFDPLRPRLLRIAYRMLGIVAEAEDVVQEAYLRWHQTDRAAVRDAEAVLVRTVTR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LCLDVLKSARVRREEYVGTWLPEPIVDAVEGDDLTLPLMMALERLSPLERAAFLLHDVFG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHC
MDFEEVAKAMGRAPAACRQLASRARAHVREARPRFPVSEAQGSELASAFYAASRSGDMGA
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
LQALLAQDVVVYSDGGGKVKAALNPIYGQEKTVRFFEGLLRITGVNASQLVHEGFIDGLP
HHHHHHCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
AFVTLEKDGTLQTTALDIEDGRVATIYVTRNPDKLQGIRGLVGDKLPS
EEEEEECCCCEEEEEEEECCCEEEEEEEECCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA