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The map label for this gene is tdcF [C]

Identifier: 108759996

GI number: 108759996

Start: 1050074

End: 1050505

Strand: Reverse

Name: tdcF [C]

Synonym: MXAN_0920

Alternate gene names: 108759996

Gene position: 1050505-1050074 (Counterclockwise)

Preceding gene: 108761136

Following gene: 108759621

Centisome position: 11.49

GC content: 64.58

Gene sequence:

>432_bases
GTGAGCAGTGACAGCGCACGAGTCGATTCGCAGAAGGCCCCCGAACCGGTGGGCCTGTACCCTCACGCCCGGCGCGTGGG
CAACCTCCTGTTCCTGTCCGGCGTGGGCCCGCGCGAGCGCGGCACGAAGAAGATTCCCGGTGTGGAGCTGGACGCGGAGG
GCAACATCGTCTCGTACGACATCGAGGCGCAGTGCCACTCGGTGTTCCGCAACGTCCGCTACATCCTGGAGGACGCGGGC
GCGTCCTGGGACAAGCTGGTGGACGTGACGGTGTACCTCACCGACATGAAGAAGGACTTTCCCACCTTCAACCGGCTGTG
GGCGGAGTACTTCAAGGACAACCCGCCGTGCCGCACCACGCTCGAAATCAACCGGCTGCCCACGCCGATTGCCATCGAGC
TCAAGTGCATCGCCACCATCGGAGGTGAATGA

Upstream 100 bases:

>100_bases
ACGCGAGGGCGGCTGGGACGCGCTGCGCTTCTTCACCGAGCCGAAGAACGTCTGCATCAAGCTGTGAGCCCCCTACCCCC
CCACGTGAGGAGAGCACACC

Downstream 100 bases:

>100_bases
ATGGGCCGCCTGACCCCCATCAACTTCAAGAAGTGGATTGATGAGCACCGCCACCTGCTCAAGCCCCCCGTGGGCAACCA
GCAGGTGTGGGAGGACCGGG

Product: 2-aminomuconate deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MSSDSARVDSQKAPEPVGLYPHARRVGNLLFLSGVGPRERGTKKIPGVELDAEGNIVSYDIEAQCHSVFRNVRYILEDAG
ASWDKLVDVTVYLTDMKKDFPTFNRLWAEYFKDNPPCRTTLEINRLPTPIAIELKCIATIGGE

Sequences:

>Translated_143_residues
MSSDSARVDSQKAPEPVGLYPHARRVGNLLFLSGVGPRERGTKKIPGVELDAEGNIVSYDIEAQCHSVFRNVRYILEDAG
ASWDKLVDVTVYLTDMKKDFPTFNRLWAEYFKDNPPCRTTLEINRLPTPIAIELKCIATIGGE
>Mature_142_residues
SSDSARVDSQKAPEPVGLYPHARRVGNLLFLSGVGPRERGTKKIPGVELDAEGNIVSYDIEAQCHSVFRNVRYILEDAGA
SWDKLVDVTVYLTDMKKDFPTFNRLWAEYFKDNPPCRTTLEINRLPTPIAIELKCIATIGGE

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87082213, Length=134, Percent_Identity=28.3582089552239, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI87082396, Length=137, Percent_Identity=29.1970802919708, Blast_Score=67, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=134, Percent_Identity=28.3582089552239, Blast_Score=69, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71982068, Length=134, Percent_Identity=28.3582089552239, Blast_Score=69, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=134, Percent_Identity=28.3582089552239, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322138, Length=131, Percent_Identity=29.7709923664122, Blast_Score=73, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320899, Length=114, Percent_Identity=29.8245614035088, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 15983; Mature: 15852

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDSARVDSQKAPEPVGLYPHARRVGNLLFLSGVGPRERGTKKIPGVELDAEGNIVSYD
CCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCCCCCCCEEECCCCCEEEEE
IEAQCHSVFRNVRYILEDAGASWDKLVDVTVYLTDMKKDFPTFNRLWAEYFKDNPPCRTT
HHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEE
LEINRLPTPIAIELKCIATIGGE
EEECCCCCCEEEEEEEEEECCCC
>Mature Secondary Structure 
SSDSARVDSQKAPEPVGLYPHARRVGNLLFLSGVGPRERGTKKIPGVELDAEGNIVSYD
CCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCCCCCCCEEECCCCCEEEEE
IEAQCHSVFRNVRYILEDAGASWDKLVDVTVYLTDMKKDFPTFNRLWAEYFKDNPPCRTT
HHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEE
LEINRLPTPIAIELKCIATIGGE
EEECCCCCCEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]