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The map label for this gene is rfaY [H]

Identifier: 108759969

GI number: 108759969

Start: 6191703

End: 6192341

Strand: Direct

Name: rfaY [H]

Synonym: MXAN_4949

Alternate gene names: 108759969

Gene position: 6191703-6192341 (Clockwise)

Preceding gene: 108758180

Following gene: 108760426

Centisome position: 67.74

GC content: 68.23

Gene sequence:

>639_bases
ATGGAGACGGTAGCGTCCACCGGCCCTGTGGCCGGCGGGCCTTTGCGAGGGTCTGGAGGACAGGTGGGTGCGTCGGAGGG
ACTGACGGAATGGGTGCGGCGGGCAGCGCATGGGGAGGCGTCTGCCTATAGCGAGATCTACCGGCGCACACGTCCCCTGG
TGACGCGGCTGGTGGGCGGCTTCGCCCAGTTGGACTCGGATGAGGTGGAGGACGTCATCCAGGAGACCTTCGTCCGGGCG
TTCCGGGCGCTCCCCCGGCTGAAGGAGCCGGGGGCCTTCGAGTCATGGCTGCTGTCCATTGCCCGAAACCGGGCCCGGAC
GCGGCTGGAGCGGAAGTCCAGTACCCGGCGGCTGGAGGAGGACGTGGCGGATCCGGATCCGGAATCGGTTCCCCACATTC
CCGAGGCGCTTCAACTGGAGCGTGACATCGCGGTGGTGCGGCGACTCATCGCGGAGCTGCCCGAGGGCGAGGAGAAACGG
ACGGTGCACCTCTTCTACGTGGAGGGTGAGCTGTCCGCGCGGGAAATTGCGGAGAAGCTGGGCGTGGGAAAAAGCGCGGT
GACGATGCGGCTGGAGCGGTTCCGGTCTCGAATCAAGCGCGAGCTGCTGCGGCGAGTCCTCGCCGGCCGGTGGGAGTGA

Upstream 100 bases:

>100_bases
GCATGTCAGTGTCCCTTCTTGAAATGAACGGCCGCGGAGACATTCTTCCCCCCAGCGCCCCCCCGGGTGCCAGCGAGAAG
AAGGTTGCCCGCTTGCTTCC

Downstream 100 bases:

>100_bases
GTGTTCATGAAACACCTGGACGATGGCGCACTGGGCGCCCTTTCCCGCCGAGAGCCCGAGGCCGTGGCGTACTTCGCCGC
GCACCTGGCGCACCCGTGTG

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
METVASTGPVAGGPLRGSGGQVGASEGLTEWVRRAAHGEASAYSEIYRRTRPLVTRLVGGFAQLDSDEVEDVIQETFVRA
FRALPRLKEPGAFESWLLSIARNRARTRLERKSSTRRLEEDVADPDPESVPHIPEALQLERDIAVVRRLIAELPEGEEKR
TVHLFYVEGELSAREIAEKLGVGKSAVTMRLERFRSRIKRELLRRVLAGRWE

Sequences:

>Translated_212_residues
METVASTGPVAGGPLRGSGGQVGASEGLTEWVRRAAHGEASAYSEIYRRTRPLVTRLVGGFAQLDSDEVEDVIQETFVRA
FRALPRLKEPGAFESWLLSIARNRARTRLERKSSTRRLEEDVADPDPESVPHIPEALQLERDIAVVRRLIAELPEGEEKR
TVHLFYVEGELSAREIAEKLGVGKSAVTMRLERFRSRIKRELLRRVLAGRWE
>Mature_212_residues
METVASTGPVAGGPLRGSGGQVGASEGLTEWVRRAAHGEASAYSEIYRRTRPLVTRLVGGFAQLDSDEVEDVIQETFVRA
FRALPRLKEPGAFESWLLSIARNRARTRLERKSSTRRLEEDVADPDPESVPHIPEALQLERDIAVVRRLIAELPEGEEKR
TVHLFYVEGELSAREIAEKLGVGKSAVTMRLERFRSRIKRELLRRVLAGRWE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in lipopolysaccharide biosynthesis and pathogenicity [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23839; Mature: 23839

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METVASTGPVAGGPLRGSGGQVGASEGLTEWVRRAAHGEASAYSEIYRRTRPLVTRLVGG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
FAQLDSDEVEDVIQETFVRAFRALPRLKEPGAFESWLLSIARNRARTRLERKSSTRRLEE
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVADPDPESVPHIPEALQLERDIAVVRRLIAELPEGEEKRTVHLFYVEGELSAREIAEKL
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
GVGKSAVTMRLERFRSRIKRELLRRVLAGRWE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
METVASTGPVAGGPLRGSGGQVGASEGLTEWVRRAAHGEASAYSEIYRRTRPLVTRLVGG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
FAQLDSDEVEDVIQETFVRAFRALPRLKEPGAFESWLLSIARNRARTRLERKSSTRRLEE
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVADPDPESVPHIPEALQLERDIAVVRRLIAELPEGEEKRTVHLFYVEGELSAREIAEKL
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
GVGKSAVTMRLERFRSRIKRELLRRVLAGRWE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217; 7579621 [H]