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The map label for this gene is cph2 [H]

Identifier: 108759945

GI number: 108759945

Start: 4935710

End: 4936585

Strand: Reverse

Name: cph2 [H]

Synonym: MXAN_4029

Alternate gene names: 108759945

Gene position: 4936585-4935710 (Counterclockwise)

Preceding gene: 108758878

Following gene: 108761749

Centisome position: 54.01

GC content: 65.75

Gene sequence:

>876_bases
GTGCAGAAGGAGACGGTCGTCACGGTCATCTCGAAGATCTCCGACCGGCCGGTCAACCTCGACGCGGCGCTGGTGGTGAT
CTACGGCTTGGACCTGGGGCGCAAGTTCGACCTCACGTCCGAGGAGACGCTCATCGGGCGCTCGTCCAAGGCGGACATCC
AGATCGACCAGGAATCGGTCAGCCGCAACCACGCGAGCATCACCAATTCGCGCGAGGGCGTGCGCATCCGCGACCTGGGC
TCCACCAACGGCACGTTCGTCAACGACGAACTGGCGGAGGGGGTGCGCGAGCTGCGCAACGGCGACCTCGTGAAGATTGG
CCGCACCATCTTCAAGTACATCGCCGGCGGGAACATCGAGGCCGCGTACCACGACGAAATCTACCGGCTGACCACGATGG
ACGGCCTCACGCAGATCTACAACCGGCGCTACTTCGACGAGCAGCTGGACCGGGAGATTTCGCGGAGCCGCCGCTACGAG
CGGATGCTGTCGCTGGTGCTGCTGGACATCGACCACTTCAAGGCCGTGAACGACAAGTACGGGCACCTGGCGGGGGACTC
GGTGCTCAAGCAGCTCGCATCCACGGTGCGCACGAAGATCCGCCGTGAGGACGTGTTCGCGCGTTACGGCGGCGAGGAGT
TCGCCATCCTGCTGCCGGAGGTGTCGCTGTCCGGCACGCGTCAGCTCGCGGAGAAGGTGCGCCGGCTGGTGGAGAAGCAG
CGCTTCGAGTTCGACCGGCAGGTGATTCCCGTCACGGTGTCCGTGGGGCTCGCGGTGCTGGAGCCGCACCACCGCGAGCC
AGGTGAACTGGTGCGCGACGCCGACGAGAAGCTCTTCGATGCGAAAACGTCCGGCCGCAACCGCGTGGTGGGCTGA

Upstream 100 bases:

>100_bases
TTCCCTGAGCTCCGCGTAAGGGAACATCCGCCTGGGTTTTCGCGTGCTGGCTCGCTTTCGTGATTTGCCGGGTGGTAGCG
TTGTCGTTCCGGGAGGCAAG

Downstream 100 bases:

>100_bases
GTCTCCAGCCCACCAAGTGCCTGTCCAGGCGCTTCCGCTTCAGCCCGCGAAGACGGAGCGGCGCTCGCGCAGCAGTGACT
GGAGCATGCTCTGGATGGCC

Product: FHA domain/GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MQKETVVTVISKISDRPVNLDAALVVIYGLDLGRKFDLTSEETLIGRSSKADIQIDQESVSRNHASITNSREGVRIRDLG
STNGTFVNDELAEGVRELRNGDLVKIGRTIFKYIAGGNIEAAYHDEIYRLTTMDGLTQIYNRRYFDEQLDREISRSRRYE
RMLSLVLLDIDHFKAVNDKYGHLAGDSVLKQLASTVRTKIRREDVFARYGGEEFAILLPEVSLSGTRQLAEKVRRLVEKQ
RFEFDRQVIPVTVSVGLAVLEPHHREPGELVRDADEKLFDAKTSGRNRVVG

Sequences:

>Translated_291_residues
MQKETVVTVISKISDRPVNLDAALVVIYGLDLGRKFDLTSEETLIGRSSKADIQIDQESVSRNHASITNSREGVRIRDLG
STNGTFVNDELAEGVRELRNGDLVKIGRTIFKYIAGGNIEAAYHDEIYRLTTMDGLTQIYNRRYFDEQLDREISRSRRYE
RMLSLVLLDIDHFKAVNDKYGHLAGDSVLKQLASTVRTKIRREDVFARYGGEEFAILLPEVSLSGTRQLAEKVRRLVEKQ
RFEFDRQVIPVTVSVGLAVLEPHHREPGELVRDADEKLFDAKTSGRNRVVG
>Mature_291_residues
MQKETVVTVISKISDRPVNLDAALVVIYGLDLGRKFDLTSEETLIGRSSKADIQIDQESVSRNHASITNSREGVRIRDLG
STNGTFVNDELAEGVRELRNGDLVKIGRTIFKYIAGGNIEAAYHDEIYRLTTMDGLTQIYNRRYFDEQLDREISRSRRYE
RMLSLVLLDIDHFKAVNDKYGHLAGDSVLKQLASTVRTKIRREDVFARYGGEEFAILLPEVSLSGTRQLAEKVRRLVEKQ
RFEFDRQVIPVTVSVGLAVLEPHHREPGELVRDADEKLFDAKTSGRNRVVG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=38.9937106918239, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=35.2201257861635, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1788381, Length=156, Percent_Identity=35.2564102564103, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=37.9746835443038, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=36.5853658536585, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1787802, Length=159, Percent_Identity=37.1069182389937, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=36.094674556213, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=38.2716049382716, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=32.9268292682927, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787541, Length=185, Percent_Identity=30.2702702702703, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787056, Length=182, Percent_Identity=30.2197802197802, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=102, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=28.1045751633987, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 33009; Mature: 33009

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50006 FHA_DOMAIN ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKETVVTVISKISDRPVNLDAALVVIYGLDLGRKFDLTSEETLIGRSSKADIQIDQESV
CCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEECCCCCHHHCCCCCCCCEEECHHHH
SRNHASITNSREGVRIRDLGSTNGTFVNDELAEGVRELRNGDLVKIGRTIFKYIAGGNIE
CCCHHHCCCCCCCEEEEECCCCCCCEECHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCC
AAYHDEIYRLTTMDGLTQIYNRRYFDEQLDREISRSRRYERMLSLVLLDIDHFKAVNDKY
EEECCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GHLAGDSVLKQLASTVRTKIRREDVFARYGGEEFAILLPEVSLSGTRQLAEKVRRLVEKQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
RFEFDRQVIPVTVSVGLAVLEPHHREPGELVRDADEKLFDAKTSGRNRVVG
HHHHCCCEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQKETVVTVISKISDRPVNLDAALVVIYGLDLGRKFDLTSEETLIGRSSKADIQIDQESV
CCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEECCCCCHHHCCCCCCCCEEECHHHH
SRNHASITNSREGVRIRDLGSTNGTFVNDELAEGVRELRNGDLVKIGRTIFKYIAGGNIE
CCCHHHCCCCCCCEEEEECCCCCCCEECHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCC
AAYHDEIYRLTTMDGLTQIYNRRYFDEQLDREISRSRRYERMLSLVLLDIDHFKAVNDKY
EEECCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GHLAGDSVLKQLASTVRTKIRREDVFARYGGEEFAILLPEVSLSGTRQLAEKVRRLVEKQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
RFEFDRQVIPVTVSVGLAVLEPHHREPGELVRDADEKLFDAKTSGRNRVVG
HHHHCCCEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]