| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is pol [H]
Identifier: 108759901
GI number: 108759901
Start: 1921184
End: 1923598
Strand: Direct
Name: pol [H]
Synonym: MXAN_1620
Alternate gene names: 108759901
Gene position: 1921184-1923598 (Clockwise)
Preceding gene: 108758953
Following gene: 108763539
Centisome position: 21.02
GC content: 73.25
Gene sequence:
>2415_bases ATGGAGGACGAGTGGCTCTGGGGCTGGGACCCCACGCCGGGCATCGTCTCCGTGTGGGCGGAGCCCGACGGCCGCGCCTT CGTCTGGCGCCGCGTCCCCAAGACGGGGGAGCTGCTTCGCGAGGACGTGCGCTTCCGCCCGTGGTTGCTGCTCGCGTCCC TGGAGGACCTGGCGCACCTGGGGCCTCGGCTGCGTCCGGAGTCGGATGGCCCCGCGCGCTACCGGGTGACGTGGCAGGAA CTCGAAGGGCCCGGTGCGTTGCGCTACCTGGTCCGCGGAGATGACGGCCGCGCGCTCACCAGCGCGGTGCTGGAAGGCGC GTCACGCCGCCTGGGCCAGCCGGTGAGTCACCTGAAGGAGCTGGGCGCGAACACGGTGCTCGCGCTGCCTCCGGAGGAGC AGTACCTCACGATGTCGGGCCGCACGTATTTCCGCGACCTCGCCTTCGATGCGCTGCGCCGCATGCAGTTCGACCTGGAG ACCACCGGGTTGGACCCGGCGCATCACCGCGTCTTCCTGGTGGCGCTGCGAGGCCCGGACGGCGCGACGGAGACACTCGA AGCCCAGGGGGATGACGACTCGGCGGAGGCGGACCTGCTCTACCACCTGGCGGAGCGCGTGCGCGCCTGGGACCCCGACG TCATCGAGAACCACAACCTGCACGGCTTCGACCTGCCGTTCCTCGCGCGGCGAGCCAGGCACCTGGGGGTGTCATTGGCG CTGGGCCGCGCGGGGGCACCGGGCTTGCGGCACCGCCCGTCCGCCAGGGGGGCCGCGCTGGGACGGCCCGTGCCCGGCGC GCCTCCGGATGCGATGCGCCGTGCGCGCTACACCGTGCCCGGCCGTGAGTTCATCGACACGCTGGACGCGGTGCTGCGGC ATGACTTCTCCACGAGGGATTTGCCGGGCCATGGCCTCAAGGCCGTCGCGAAGCACCTGGGCCTGGCGGGGCCCGAGCGC GAGCACATCCCCGGTGCCCGCGTATATGACGTCTTCCGCACGGACCCGGCGCGCGTGCGGCGCTATGCGCGTGATGACGT GACGGAGGCGGGCGGCCTCGCGAGGCTGCTCGGGGGCGCGGCCTTTGCGCTCGCACGCATGGCGCCCCGCCGCTACGAGC GGCTGGCGGACGCGGGGCCGGCCACCGGCGTGTTGGACCCGCTGCTCGTCCGGGCCTATCTCCGGGAGGGCGCGGCGCTG CCCGCGCACCAGGAGGGGGATGGCACGCCGCACAGCGGCGCGGCGCTCCACCTGTTCGCCACGGGCGTGGCCCGGCGCAT CGTGAAGGCGGACGTCGCCAGCCTCTATCCCTCCCTGATGCGCCAGTACCGGATTGGCCCCAAGCGGGACAGGCTGGGCG TGCTGCTGGCGTTGGTGGACCGCCTGGTGGACCAGCGGCTGGCGGCGAAGGGCAGGGCGCGTGCCGCGGCGCCTGGCTCG CAGGAGCGCTTCACGAACGAGGCGCTGTCGGCGGCGATGAAAATCGTCGTCAACTCCGCCTACGGCTATCTGGGCGCGGT GGGGCTCACGCGCTTCTCGGACGTGCACGCGGCCAACGAGGTGACGCGCCAGGGCCGCGAGGTGCTGGGCCTCCTCTGCC GGGAGCTGGCTCGCCGGGGCGTCACGCTGCTGGAGGCGGACACCGACGGCGTGTACTTCGCCGTCCCGGAGGACTGGCGG GAGGCCGACGAGCGCCGGGTCGTCTCGGAGGTCGCCGCGCTGCTGCCGCCCCGCGTGCAACTGGAGTTCGACGGGCGCTA CGCCGCCATGCTGTCGCACGAACCGAAGAACTACGCGCTCCAGCCGTATGACGGACCGCTGGTGCTCCGGGGCGTGGCCT TCCGCTCCAGCCGCGCGGAGCCCTTCGGAGAGGCCTTCCTGCGCCGCGCGTTGCGCTGTCTCCTGGCGGAAGACATCCCG GGCGTTCGTGAGGTGTACGTCGCGACGGTGATGGCCCTGCGCCGCCGGGAGCTGCCCACGCCGGAGGTCTGCGCGCACGT CCGCCTGACGAAGACGGGCGCCCAGTACCTCGCCCTCCGGCCCCGCCGGCGCGAGCTCCCCTACGAGGCCATGCTGGCCA GCGGCCGGAAGGAATGGCCTTTGGGTGAGCAGGTCCGCGTCTACCGCGCCGTGGGAGGCCGGGCGGGCCTGCTCCCCATT CCGGAGGCGGATGACCCGGGCACGGCGCGGCCCCTGTCACGCGAGGAGGACCCGCGCGACTACGACGTGGAGTACTACGT GCGGCTCCTGCGTGAGACGTTCGCCGCGCGACTGGTGCGCGCGCTGACGCCAGAGGACTTCCGGACCGTGTTCGACGACC CTGGCCAGCCCTCCCTCTTCGCGCCCTCGCTCGAGGACGCGAAGCCCATTCTCACGGTGCTGACGGAGCCGGCGGCCGCC CTGGAAGGGGCGTAG
Upstream 100 bases:
>100_bases TCAAGATGACGTGATGTCCCTGGAGCAACGTGCCTTGCATCCCACGCCGCGAGCGGCTTGCATCGCGCGCGTTCGCGGCA CTTCCGCCCGGAGGGACTCC
Downstream 100 bases:
>100_bases CCGCGCGCGCGACGGCTCAGGACACCCCGGCGTGCGTTTGGGCAGCGACGGGGGACTGCTGCGGCGCCAGGGCGGTGCGC TGCAGCCAGCCCGCGAGTCC
Product: putative DNA polymerase II
Products: NA
Alternate protein names: Pfu polymerase [H]
Number of amino acids: Translated: 804; Mature: 804
Protein sequence:
>804_residues MEDEWLWGWDPTPGIVSVWAEPDGRAFVWRRVPKTGELLREDVRFRPWLLLASLEDLAHLGPRLRPESDGPARYRVTWQE LEGPGALRYLVRGDDGRALTSAVLEGASRRLGQPVSHLKELGANTVLALPPEEQYLTMSGRTYFRDLAFDALRRMQFDLE TTGLDPAHHRVFLVALRGPDGATETLEAQGDDDSAEADLLYHLAERVRAWDPDVIENHNLHGFDLPFLARRARHLGVSLA LGRAGAPGLRHRPSARGAALGRPVPGAPPDAMRRARYTVPGREFIDTLDAVLRHDFSTRDLPGHGLKAVAKHLGLAGPER EHIPGARVYDVFRTDPARVRRYARDDVTEAGGLARLLGGAAFALARMAPRRYERLADAGPATGVLDPLLVRAYLREGAAL PAHQEGDGTPHSGAALHLFATGVARRIVKADVASLYPSLMRQYRIGPKRDRLGVLLALVDRLVDQRLAAKGRARAAAPGS QERFTNEALSAAMKIVVNSAYGYLGAVGLTRFSDVHAANEVTRQGREVLGLLCRELARRGVTLLEADTDGVYFAVPEDWR EADERRVVSEVAALLPPRVQLEFDGRYAAMLSHEPKNYALQPYDGPLVLRGVAFRSSRAEPFGEAFLRRALRCLLAEDIP GVREVYVATVMALRRRELPTPEVCAHVRLTKTGAQYLALRPRRRELPYEAMLASGRKEWPLGEQVRVYRAVGGRAGLLPI PEADDPGTARPLSREEDPRDYDVEYYVRLLRETFAARLVRALTPEDFRTVFDDPGQPSLFAPSLEDAKPILTVLTEPAAA LEGA
Sequences:
>Translated_804_residues MEDEWLWGWDPTPGIVSVWAEPDGRAFVWRRVPKTGELLREDVRFRPWLLLASLEDLAHLGPRLRPESDGPARYRVTWQE LEGPGALRYLVRGDDGRALTSAVLEGASRRLGQPVSHLKELGANTVLALPPEEQYLTMSGRTYFRDLAFDALRRMQFDLE TTGLDPAHHRVFLVALRGPDGATETLEAQGDDDSAEADLLYHLAERVRAWDPDVIENHNLHGFDLPFLARRARHLGVSLA LGRAGAPGLRHRPSARGAALGRPVPGAPPDAMRRARYTVPGREFIDTLDAVLRHDFSTRDLPGHGLKAVAKHLGLAGPER EHIPGARVYDVFRTDPARVRRYARDDVTEAGGLARLLGGAAFALARMAPRRYERLADAGPATGVLDPLLVRAYLREGAAL PAHQEGDGTPHSGAALHLFATGVARRIVKADVASLYPSLMRQYRIGPKRDRLGVLLALVDRLVDQRLAAKGRARAAAPGS QERFTNEALSAAMKIVVNSAYGYLGAVGLTRFSDVHAANEVTRQGREVLGLLCRELARRGVTLLEADTDGVYFAVPEDWR EADERRVVSEVAALLPPRVQLEFDGRYAAMLSHEPKNYALQPYDGPLVLRGVAFRSSRAEPFGEAFLRRALRCLLAEDIP GVREVYVATVMALRRRELPTPEVCAHVRLTKTGAQYLALRPRRRELPYEAMLASGRKEWPLGEQVRVYRAVGGRAGLLPI PEADDPGTARPLSREEDPRDYDVEYYVRLLRETFAARLVRALTPEDFRTVFDDPGQPSLFAPSLEDAKPILTVLTEPAAA LEGA >Mature_804_residues MEDEWLWGWDPTPGIVSVWAEPDGRAFVWRRVPKTGELLREDVRFRPWLLLASLEDLAHLGPRLRPESDGPARYRVTWQE LEGPGALRYLVRGDDGRALTSAVLEGASRRLGQPVSHLKELGANTVLALPPEEQYLTMSGRTYFRDLAFDALRRMQFDLE TTGLDPAHHRVFLVALRGPDGATETLEAQGDDDSAEADLLYHLAERVRAWDPDVIENHNLHGFDLPFLARRARHLGVSLA LGRAGAPGLRHRPSARGAALGRPVPGAPPDAMRRARYTVPGREFIDTLDAVLRHDFSTRDLPGHGLKAVAKHLGLAGPER EHIPGARVYDVFRTDPARVRRYARDDVTEAGGLARLLGGAAFALARMAPRRYERLADAGPATGVLDPLLVRAYLREGAAL PAHQEGDGTPHSGAALHLFATGVARRIVKADVASLYPSLMRQYRIGPKRDRLGVLLALVDRLVDQRLAAKGRARAAAPGS QERFTNEALSAAMKIVVNSAYGYLGAVGLTRFSDVHAANEVTRQGREVLGLLCRELARRGVTLLEADTDGVYFAVPEDWR EADERRVVSEVAALLPPRVQLEFDGRYAAMLSHEPKNYALQPYDGPLVLRGVAFRSSRAEPFGEAFLRRALRCLLAEDIP GVREVYVATVMALRRRELPTPEVCAHVRLTKTGAQYLALRPRRRELPYEAMLASGRKEWPLGEQVRVYRAVGGRAGLLPI PEADDPGTARPLSREEDPRDYDVEYYVRLLRETFAARLVRALTPEDFRTVFDDPGQPSLFAPSLEDAKPILTVLTEPAAA LEGA
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' exonuclease activity [H]
COG id: COG0417
COG function: function code L; DNA polymerase elongation subunit (family B)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-B family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006172 - InterPro: IPR017964 - InterPro: IPR006133 - InterPro: IPR006134 - InterPro: IPR004578 - InterPro: IPR023211 - InterPro: IPR012337 [H]
Pfam domain/function: PF00136 DNA_pol_B; PF03104 DNA_pol_B_exo [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 88934; Mature: 88934
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDEWLWGWDPTPGIVSVWAEPDGRAFVWRRVPKTGELLREDVRFRPWLLLASLEDLAHL CCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHC GPRLRPESDGPARYRVTWQELEGPGALRYLVRGDDGRALTSAVLEGASRRLGQPVSHLKE CCCCCCCCCCCCEEEEEHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHH LGANTVLALPPEEQYLTMSGRTYFRDLAFDALRRMQFDLETTGLDPAHHRVFLVALRGPD CCCCCEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHCHHCCCCCCCCCEEEEEEEECCC GATETLEAQGDDDSAEADLLYHLAERVRAWDPDVIENHNLHGFDLPFLARRARHLGVSLA CCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHCCCEEE LGRAGAPGLRHRPSARGAALGRPVPGAPPDAMRRARYTVPGREFIDTLDAVLRHDFSTRD ECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC LPGHGLKAVAKHLGLAGPEREHIPGARVYDVFRTDPARVRRYARDDVTEAGGLARLLGGA CCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHH AFALARMAPRRYERLADAGPATGVLDPLLVRAYLREGAALPAHQEGDGTPHSGAALHLFA HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEHHHH TGVARRIVKADVASLYPSLMRQYRIGPKRDRLGVLLALVDRLVDQRLAAKGRARAAAPGS HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC QERFTNEALSAAMKIVVNSAYGYLGAVGLTRFSDVHAANEVTRQGREVLGLLCRELARRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VTLLEADTDGVYFAVPEDWREADERRVVSEVAALLPPRVQLEFDGRYAAMLSHEPKNYAL CEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCC QPYDGPLVLRGVAFRSSRAEPFGEAFLRRALRCLLAEDIPGVREVYVATVMALRRRELPT CCCCCCEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC PEVCAHVRLTKTGAQYLALRPRRRELPYEAMLASGRKEWPLGEQVRVYRAVGGRAGLLPI HHHHHEEEEECCCCHHHEECCHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCC PEADDPGTARPLSREEDPRDYDVEYYVRLLRETFAARLVRALTPEDFRTVFDDPGQPSLF CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEE APSLEDAKPILTVLTEPAAALEGA CCCCCCCCHHHHHHCCCHHHHCCC >Mature Secondary Structure MEDEWLWGWDPTPGIVSVWAEPDGRAFVWRRVPKTGELLREDVRFRPWLLLASLEDLAHL CCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHC GPRLRPESDGPARYRVTWQELEGPGALRYLVRGDDGRALTSAVLEGASRRLGQPVSHLKE CCCCCCCCCCCCEEEEEHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHH LGANTVLALPPEEQYLTMSGRTYFRDLAFDALRRMQFDLETTGLDPAHHRVFLVALRGPD CCCCCEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHCHHCCCCCCCCCEEEEEEEECCC GATETLEAQGDDDSAEADLLYHLAERVRAWDPDVIENHNLHGFDLPFLARRARHLGVSLA CCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHCCCEEE LGRAGAPGLRHRPSARGAALGRPVPGAPPDAMRRARYTVPGREFIDTLDAVLRHDFSTRD ECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC LPGHGLKAVAKHLGLAGPEREHIPGARVYDVFRTDPARVRRYARDDVTEAGGLARLLGGA CCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHH AFALARMAPRRYERLADAGPATGVLDPLLVRAYLREGAALPAHQEGDGTPHSGAALHLFA HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEHHHH TGVARRIVKADVASLYPSLMRQYRIGPKRDRLGVLLALVDRLVDQRLAAKGRARAAAPGS HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC QERFTNEALSAAMKIVVNSAYGYLGAVGLTRFSDVHAANEVTRQGREVLGLLCRELARRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VTLLEADTDGVYFAVPEDWREADERRVVSEVAALLPPRVQLEFDGRYAAMLSHEPKNYAL CEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCC QPYDGPLVLRGVAFRSSRAEPFGEAFLRRALRCLLAEDIPGVREVYVATVMALRRRELPT CCCCCCEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC PEVCAHVRLTKTGAQYLALRPRRRELPYEAMLASGRKEWPLGEQVRVYRAVGGRAGLLPI HHHHHEEEEECCCCHHHEECCHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCC PEADDPGTARPLSREEDPRDYDVEYYVRLLRETFAARLVRALTPEDFRTVFDDPGQPSLF CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEE APSLEDAKPILTVLTEPAAALEGA CCCCCCCCHHHHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8441634; 1762925; 1579479 [H]