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The map label for this gene is rpoE [C]

Identifier: 108759745

GI number: 108759745

Start: 3440136

End: 3440822

Strand: Direct

Name: rpoE [C]

Synonym: MXAN_2929

Alternate gene names: 108759745

Gene position: 3440136-3440822 (Clockwise)

Preceding gene: 108759803

Following gene: 108758662

Centisome position: 37.64

GC content: 67.69

Gene sequence:

>687_bases
TTGGGCCGTCCGCCCCCGGCTGGGGTTGGCGATGGTGGTTTTTCTTTGAGCGCCGATGACCCGATTGGCCCGGTGCCGTC
CTCCATGGCGGCAATGAGGAGCTCGGGCTCACACGCAGCGGACCCACGTCGTGCGGCGGAAGACCCTCGCATCCAGGCCG
CCATCCAGGGCGAGCGAGAGGCAACCGGCGCTTTGCTGATGGAGCTGCTCCCCCGGGTTCGCAATCTCGTGCGCTACCTG
GTGCGCGGGGATGTGGACGTGGAGGACATCGCCCAGGAGGCACTCATCGCCCTGGTGCGGGGGCTGCCGTCGTATCGCGC
TGAAGGCCGCTTCCAATCCTGGGCGGATCGGGTGGTGGCGCGGACGACGTTCGCATGGCTGAAGCGCTCCCGAGGCCGGG
ATGCCCAGCACGCGGATGCGCCGGTGGAGCTGGTCGCGGTTCCCTCTGAGGATGCCCTGCCGGACGAGTATGTTCATCGC
CGTCACATGGTGACACTCCTGGATCGGCTTTCGAATGAGCAGCGGCATGCACTGGTGTTGCATCACGTGCTGGAGTTGAG
CGTGCCGGAGATTTCAACGGAGCTGGGCATTCCCTTCGAGACGGTGCGCAGCCGGCTCCGCTTGGGGCGGACGGCGCTGC
GCTCGCTGGCGACCGCGGAGGGAGACGGAGGGGAGGAGCGGGGATGA

Upstream 100 bases:

>100_bases
CGCGTGTCGGCCTGGAGGCGAGCATGGCCGCGGAGGTCCTCCTGGGACGGCCCGAGCTTCGCTACGCCATCGACGGAAAC
TTCGTGTCACGCGGTGCGGG

Downstream 100 bases:

>100_bases
GTGACTTCAGGGAAGAGAGGGATGACGCCCTGAATGCGCTGGTCCTGCCGTTGGACGAAGGCGTGGGGCCGGCCCGACGC
ATCTCCCGGGAACGGTCGGC

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit RpoE; ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MGRPPPAGVGDGGFSLSADDPIGPVPSSMAAMRSSGSHAADPRRAAEDPRIQAAIQGEREATGALLMELLPRVRNLVRYL
VRGDVDVEDIAQEALIALVRGLPSYRAEGRFQSWADRVVARTTFAWLKRSRGRDAQHADAPVELVAVPSEDALPDEYVHR
RHMVTLLDRLSNEQRHALVLHHVLELSVPEISTELGIPFETVRSRLRLGRTALRSLATAEGDGGEERG

Sequences:

>Translated_228_residues
MGRPPPAGVGDGGFSLSADDPIGPVPSSMAAMRSSGSHAADPRRAAEDPRIQAAIQGEREATGALLMELLPRVRNLVRYL
VRGDVDVEDIAQEALIALVRGLPSYRAEGRFQSWADRVVARTTFAWLKRSRGRDAQHADAPVELVAVPSEDALPDEYVHR
RHMVTLLDRLSNEQRHALVLHHVLELSVPEISTELGIPFETVRSRLRLGRTALRSLATAEGDGGEERG
>Mature_227_residues
GRPPPAGVGDGGFSLSADDPIGPVPSSMAAMRSSGSHAADPRRAAEDPRIQAAIQGEREATGALLMELLPRVRNLVRYLV
RGDVDVEDIAQEALIALVRGLPSYRAEGRFQSWADRVVARTTFAWLKRSRGRDAQHADAPVELVAVPSEDALPDEYVHRR
HMVTLLDRLSNEQRHALVLHHVLELSVPEISTELGIPFETVRSRLRLGRTALRSLATAEGDGGEERG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24871; Mature: 24740

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS01082 RIBOSOMAL_L7AE ; PS00485 A_DEAMINASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRPPPAGVGDGGFSLSADDPIGPVPSSMAAMRSSGSHAADPRRAAEDPRIQAAIQGERE
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCHH
ATGALLMELLPRVRNLVRYLVRGDVDVEDIAQEALIALVRGLPSYRAEGRFQSWADRVVA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
RTTFAWLKRSRGRDAQHADAPVELVAVPSEDALPDEYVHRRHMVTLLDRLSNEQRHALVL
HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
HHVLELSVPEISTELGIPFETVRSRLRLGRTALRSLATAEGDGGEERG
HHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GRPPPAGVGDGGFSLSADDPIGPVPSSMAAMRSSGSHAADPRRAAEDPRIQAAIQGERE
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCHH
ATGALLMELLPRVRNLVRYLVRGDVDVEDIAQEALIALVRGLPSYRAEGRFQSWADRVVA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
RTTFAWLKRSRGRDAQHADAPVELVAVPSEDALPDEYVHRRHMVTLLDRLSNEQRHALVL
HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
HHVLELSVPEISTELGIPFETVRSRLRLGRTALRSLATAEGDGGEERG
HHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA