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The map label for this gene is ychF [H]

Identifier: 108759423

GI number: 108759423

Start: 465949

End: 467058

Strand: Direct

Name: ychF [H]

Synonym: MXAN_0405

Alternate gene names: 108759423

Gene position: 465949-467058 (Clockwise)

Preceding gene: 108760214

Following gene: 108762010

Centisome position: 5.1

GC content: 66.85

Gene sequence:

>1110_bases
ATGGGTCTATCCATCGGAATCGTCGGGCTGCCCAACGTCGGCAAGTCCACCCTGTTCAACGCGCTGTCGGCCGCGGGCGC
GCAGGCGGCCAACTATCCCTTCTGCACCATCGAGCCCAACGTGGGCGTGGTGCCCGTGCCGGATGACCGCCTGGACAAGC
TGTCCGCGCTCATCAAGCCGCTGAAGAAGGTGCCCACCTCGCTGGAGTTCGTGGACATCGCCGGCTTGGTGCGCGGCGCG
TCCAAGGGCGAAGGCCTGGGCAACCAGTTCCTGGGCAACATCCGCCAGGTCAACGCCGTGCTCCACGTGCTGCGCTGCTT
CGAGGACGACAACGTCACCCACGTCGAGGGCGGGGTGAATCCGGTGCGGGACCGGGACGTGGTCGACACGGAACTGTGCC
TCAAGGACCTGGAGACGGTGGAGAAGCGCCGCGAGCGCTCCTTGAAGAACACGAAGGTGGGCGGCAAGGCTGGCGAGGAG
GCCAAGGCCGAGGTGGCGTTGCTGGACCGCATCAAGGCGAGTCTGGACAACGGCATCACCGTGCGCGCCCAGAAGCTCAC
CGAGGAGGAGAGCGCCGTCATCCATGACCTGTTCCTGCTCACCGACAAGCCCGTGCTGTACGTGGCGAACATCGGCGAGT
CGGAGCTGGGCAAGGAGGACGCGAATCCCCACGTGAAGGCCGTTCGGGAGATGGCCGCGAAGGAGGGCTTCGAGGTGGTG
GTGCTCGCCGCCGCGCTGGAGTCCGAAATCCAGCAGCTCCCGGAGTCGGAGCGTCCGGGCTTCCTGGAGAGCGCGGGCCT
GTCCGAGCCGGGCCTGCACAAGGTGGTGCGCGCCGGCTACAAGCTGCTGGGCCTGTGGACGTACTTCACCGTGGGCGAGC
AGGAGTGCCGCGCGTGGACCATCCACCAGGGCTACAAGGCCCCGCAGGCGGCCGGCGTCATCCACTCCGACTTCGAGCGC
GGCTTCATCAAGGCCGAGGTGATGCGCTGGGAGGACCTGGTGAAGCTGGGCAGCGAGTCCGCCGTGAAGGAGAAGGGCAT
GCTGCGCGTGGAAGGCAAGGAGTACGTCGTCCAGGACGGCGACTGCATGCACTTCCGCTTCAACGTGTAG

Upstream 100 bases:

>100_bases
CCGCTGAACAGCACCAGCGCCACCGGCGCCGTGCGCCGCACTGCCTAATCCCCTTCTTGGGGAAGCGCGCCCCCCGGCGC
GCGTGTTCCAGGGAATCACC

Downstream 100 bases:

>100_bases
CGGTCAGCACACGGCAGTCATCGCGGGCGCTGTGCTTCCGGACGGTTCAGTCTGGAGGCGGCGCCCGCGAGCCGTTTCAG
GGCCTGGCGGCTCAGAAGCC

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MGLSIGIVGLPNVGKSTLFNALSAAGAQAANYPFCTIEPNVGVVPVPDDRLDKLSALIKPLKKVPTSLEFVDIAGLVRGA
SKGEGLGNQFLGNIRQVNAVLHVLRCFEDDNVTHVEGGVNPVRDRDVVDTELCLKDLETVEKRRERSLKNTKVGGKAGEE
AKAEVALLDRIKASLDNGITVRAQKLTEEESAVIHDLFLLTDKPVLYVANIGESELGKEDANPHVKAVREMAAKEGFEVV
VLAAALESEIQQLPESERPGFLESAGLSEPGLHKVVRAGYKLLGLWTYFTVGEQECRAWTIHQGYKAPQAAGVIHSDFER
GFIKAEVMRWEDLVKLGSESAVKEKGMLRVEGKEYVVQDGDCMHFRFNV

Sequences:

>Translated_369_residues
MGLSIGIVGLPNVGKSTLFNALSAAGAQAANYPFCTIEPNVGVVPVPDDRLDKLSALIKPLKKVPTSLEFVDIAGLVRGA
SKGEGLGNQFLGNIRQVNAVLHVLRCFEDDNVTHVEGGVNPVRDRDVVDTELCLKDLETVEKRRERSLKNTKVGGKAGEE
AKAEVALLDRIKASLDNGITVRAQKLTEEESAVIHDLFLLTDKPVLYVANIGESELGKEDANPHVKAVREMAAKEGFEVV
VLAAALESEIQQLPESERPGFLESAGLSEPGLHKVVRAGYKLLGLWTYFTVGEQECRAWTIHQGYKAPQAAGVIHSDFER
GFIKAEVMRWEDLVKLGSESAVKEKGMLRVEGKEYVVQDGDCMHFRFNV
>Mature_368_residues
GLSIGIVGLPNVGKSTLFNALSAAGAQAANYPFCTIEPNVGVVPVPDDRLDKLSALIKPLKKVPTSLEFVDIAGLVRGAS
KGEGLGNQFLGNIRQVNAVLHVLRCFEDDNVTHVEGGVNPVRDRDVVDTELCLKDLETVEKRRERSLKNTKVGGKAGEEA
KAEVALLDRIKASLDNGITVRAQKLTEEESAVIHDLFLLTDKPVLYVANIGESELGKEDANPHVKAVREMAAKEGFEVVV
LAAALESEIQQLPESERPGFLESAGLSEPGLHKVVRAGYKLLGLWTYFTVGEQECRAWTIHQGYKAPQAAGVIHSDFERG
FIKAEVMRWEDLVKLGSESAVKEKGMLRVEGKEYVVQDGDCMHFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=371, Percent_Identity=44.4743935309973, Blast_Score=309, Evalue=2e-84,
Organism=Homo sapiens, GI58761502, Length=223, Percent_Identity=39.0134529147982, Blast_Score=151, Evalue=8e-37,
Organism=Escherichia coli, GI1787454, Length=369, Percent_Identity=56.639566395664, Blast_Score=422, Evalue=1e-119,
Organism=Escherichia coli, GI1789574, Length=128, Percent_Identity=33.59375, Blast_Score=75, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17509631, Length=370, Percent_Identity=44.3243243243243, Blast_Score=305, Evalue=2e-83,
Organism=Saccharomyces cerevisiae, GI6319499, Length=372, Percent_Identity=41.3978494623656, Blast_Score=268, Evalue=1e-72,
Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=37.7308707124011, Blast_Score=231, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6321649, Length=146, Percent_Identity=37.6712328767123, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24640873, Length=370, Percent_Identity=43.2432432432432, Blast_Score=290, Evalue=1e-78,
Organism=Drosophila melanogaster, GI24640877, Length=370, Percent_Identity=43.2432432432432, Blast_Score=290, Evalue=1e-78,
Organism=Drosophila melanogaster, GI24640875, Length=370, Percent_Identity=43.2432432432432, Blast_Score=290, Evalue=1e-78,
Organism=Drosophila melanogaster, GI24640879, Length=328, Percent_Identity=40.8536585365854, Blast_Score=233, Evalue=1e-61,
Organism=Drosophila melanogaster, GI20129375, Length=159, Percent_Identity=30.8176100628931, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 40254; Mature: 40122

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLSIGIVGLPNVGKSTLFNALSAAGAQAANYPFCTIEPNVGVVPVPDDRLDKLSALIKP
CCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCHHHHHHHHHHHH
LKKVPTSLEFVDIAGLVRGASKGEGLGNQFLGNIRQVNAVLHVLRCFEDDNVTHVEGGVN
HHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
PVRDRDVVDTELCLKDLETVEKRRERSLKNTKVGGKAGEEAKAEVALLDRIKASLDNGIT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE
VRAQKLTEEESAVIHDLFLLTDKPVLYVANIGESELGKEDANPHVKAVREMAAKEGFEVV
EEEHHHCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHHCCCEEE
VLAAALESEIQQLPESERPGFLESAGLSEPGLHKVVRAGYKLLGLWTYFTVGEQECRAWT
EHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCEEE
IHQGYKAPQAAGVIHSDFERGFIKAEVMRWEDLVKLGSESAVKEKGMLRVEGKEYVVQDG
ECCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCEEEEECC
DCMHFRFNV
CEEEEEECC
>Mature Secondary Structure 
GLSIGIVGLPNVGKSTLFNALSAAGAQAANYPFCTIEPNVGVVPVPDDRLDKLSALIKP
CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCHHHHHHHHHHHH
LKKVPTSLEFVDIAGLVRGASKGEGLGNQFLGNIRQVNAVLHVLRCFEDDNVTHVEGGVN
HHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
PVRDRDVVDTELCLKDLETVEKRRERSLKNTKVGGKAGEEAKAEVALLDRIKASLDNGIT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE
VRAQKLTEEESAVIHDLFLLTDKPVLYVANIGESELGKEDANPHVKAVREMAAKEGFEVV
EEEHHHCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHHCCCEEE
VLAAALESEIQQLPESERPGFLESAGLSEPGLHKVVRAGYKLLGLWTYFTVGEQECRAWT
EHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCEEE
IHQGYKAPQAAGVIHSDFERGFIKAEVMRWEDLVKLGSESAVKEKGMLRVEGKEYVVQDG
ECCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCEEEEECC
DCMHFRFNV
CEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]