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The map label for this gene is rpoE [H]

Identifier: 108759301

GI number: 108759301

Start: 2786443

End: 2787084

Strand: Reverse

Name: rpoE [H]

Synonym: MXAN_2395

Alternate gene names: 108759301

Gene position: 2787084-2786443 (Counterclockwise)

Preceding gene: 108763376

Following gene: 108758176

Centisome position: 30.49

GC content: 72.59

Gene sequence:

>642_bases
GTGAGCATCAGGGAGACAGGCGGCCAGGTGGTGTCCCTGCCGGCGCGCATGGCCCGGGCGGGCCTGGAGCGTGCGCCGGA
CGAGGCGCTCTGCCGCGCATTCCTGGAGGGCGATCCGGCGGCCTTCGAGGTGCTGGTGACGCGGCACCGCTCGCTCGTTT
TCTCGCTGGTGCGCCGCTACGTGACGCGCCCGGAGGACGCGGCGGACCTGGTGCAGAGCGCCTTCCTGCGCGCGTTGGAG
GCCTCGCGCCGCGTCTTCGCGCGCTTCACGCCGTCGGGACCGGCGCCCTTCCGGGCCTGGTTGGTGCGCATCGCCCTCAA
CCTGGCGAAGAACCACGCCCGTCAGGTGCAGCGGTGGCGCCCGGTGCTGGTGGCCTCCGGGCCGGATGACGTGGTGGAGG
ACCCGTCGGAGTCCGCTCAGGACCGGCTGGAGCGAGCCGAGCGCGAGCGGCAGGTTCGCGCCGAGGTGCTCGCCCTGCCC
CGCCGCCAGCGCGAGGTGCTGACGCTGCGCGTGGACGGCGGGCTGGCATTCAAGGACATCGCCGAGACGCTCGGCATCAC
GGAGAACAATGCGAAGGTGCAGTTCCACCATGCGATGAAGCGCCTCAAGGCGCGGGTGGGCGCGCCCGAGGAGAAGCACT
GA

Upstream 100 bases:

>100_bases
ATGTTTCCTGGCTCAATATCTTGCAATTCACGAACAACCAGAAATTGCTGACAGAAATCGGCCGAAATTAATCTTTATCT
CCGTCCGGGGTTGGAGCCAC

Downstream 100 bases:

>100_bases
TGGCTGCGTGCCCTGACCAGGAAGAGCGGCTGGACCTGCATGCCGCGGGGGCGTTGGAGGATGACGAGGCGCTTGGACTC
ATCCAGCACCTGGAGGGCTG

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSIRETGGQVVSLPARMARAGLERAPDEALCRAFLEGDPAAFEVLVTRHRSLVFSLVRRYVTRPEDAADLVQSAFLRALE
ASRRVFARFTPSGPAPFRAWLVRIALNLAKNHARQVQRWRPVLVASGPDDVVEDPSESAQDRLERAERERQVRAEVLALP
RRQREVLTLRVDGGLAFKDIAETLGITENNAKVQFHHAMKRLKARVGAPEEKH

Sequences:

>Translated_213_residues
MSIRETGGQVVSLPARMARAGLERAPDEALCRAFLEGDPAAFEVLVTRHRSLVFSLVRRYVTRPEDAADLVQSAFLRALE
ASRRVFARFTPSGPAPFRAWLVRIALNLAKNHARQVQRWRPVLVASGPDDVVEDPSESAQDRLERAERERQVRAEVLALP
RRQREVLTLRVDGGLAFKDIAETLGITENNAKVQFHHAMKRLKARVGAPEEKH
>Mature_212_residues
SIRETGGQVVSLPARMARAGLERAPDEALCRAFLEGDPAAFEVLVTRHRSLVFSLVRRYVTRPEDAADLVQSAFLRALEA
SRRVFARFTPSGPAPFRAWLVRIALNLAKNHARQVQRWRPVLVASGPDDVVEDPSESAQDRLERAERERQVRAEVLALPR
RQREVLTLRVDGGLAFKDIAETLGITENNAKVQFHHAMKRLKARVGAPEEKH

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=171, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23943; Mature: 23812

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRETGGQVVSLPARMARAGLERAPDEALCRAFLEGDPAAFEVLVTRHRSLVFSLVRRY
CCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
VTRPEDAADLVQSAFLRALEASRRVFARFTPSGPAPFRAWLVRIALNLAKNHARQVQRWR
HCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
PVLVASGPDDVVEDPSESAQDRLERAERERQVRAEVLALPRRQREVLTLRVDGGLAFKDI
CEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH
AETLGITENNAKVQFHHAMKRLKARVGAPEEKH
HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SIRETGGQVVSLPARMARAGLERAPDEALCRAFLEGDPAAFEVLVTRHRSLVFSLVRRY
CCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
VTRPEDAADLVQSAFLRALEASRRVFARFTPSGPAPFRAWLVRIALNLAKNHARQVQRWR
HCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
PVLVASGPDDVVEDPSESAQDRLERAERERQVRAEVLALPRRQREVLTLRVDGGLAFKDI
CEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH
AETLGITENNAKVQFHHAMKRLKARVGAPEEKH
HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]