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The map label for this gene is ygeR [C]

Identifier: 108759235

GI number: 108759235

Start: 5510074

End: 5511009

Strand: Reverse

Name: ygeR [C]

Synonym: MXAN_4449

Alternate gene names: 108759235

Gene position: 5511009-5510074 (Counterclockwise)

Preceding gene: 108760040

Following gene: 108762875

Centisome position: 60.3

GC content: 72.44

Gene sequence:

>936_bases
TTGGCGCCGTGCGTGTCCAGCCGAGCGCGTGGGGCGCTCCGGGTGTTCCTCCTGGCCGTGCTGTTGAGCGGCTGCGTGGG
CACCCGGGCATCCTCCGTTGCCGGGCCGGACACCGGGTTGGACGCCGTTTCGCGTGAGGACGAGACGGCGGAAGTCACCG
ACGCGGCGGAGCGGACCACGCCGCTTCCGTTCAGTTTGCGGGGCGTCCACGACGAACCGGAGTTGGTGGCCGTGCGCCAC
CTCGTGGCACCGGGCGAGACGATGTACCGCATCTCCCGCACCTACGGCCTCACGGTGGAGGAGCTGGGGGCGGCCAACGG
CATCAAGGCGCCGTGGGCGTTGGCGGTGGGGCAGGAGCTCTCCATCCCCGGTGTCGAGCGCAGCGTGCCCGTGCGGGCCC
TGGCGGAGGCGGACCCGGAGCCGGTCCGGACCTCTACGTCGGCTGGGGGGCGGCGCAGCGTGCCGACCTCGGGTCGCCGT
GAGGAGCCCCCGTCGCGCAGCCGGTCCCTGTCGCGTCCGGCGAGCGCCGCGGGCCGGCCTCGTGTGGCCACGCAGGGGCA
GCTCGACTGGCCTATGAGGGGCGTCCTGTACGGCCGCTTCGGGAAGAAGGGGAAGGAGCCGCACGACGGCATCGACCTGG
CCGCGCCCTCCGGGACGCCCGTGAAGACGGCGCAGGAAGGCACGGTGCTCTACGCGGGCGAGCAGCGTGGCTACGGCAAC
ATCGTCATCGTCGAGCACACGAACAAGCTGATCACCCTGTACGCGCACAACCGCGACCTGCGCGTGCGCACCGGGCAGAA
GGTGCGCCGCGAGCAGGTGATTGCCACCGTCGGCGAGTCGGGCCGGACGTCCGGGCCCCATCTGCACTTCGAGGTGCGCC
TGGACGGCAAGCCCGTGGACCCGCTCGACTTTCTGGGGCCGATGCCCTCCTCGTAG

Upstream 100 bases:

>100_bases
CTCCGCTGCACTTCGAGCTGACGGACCATGGCCGGCTTCCGGACCTCTCCGGGTGGCAGGTCGATGGCTTCAACCGGCAT
GAACCGGACGGTGCCTAGCG

Downstream 100 bases:

>100_bases
GCGAGGCGGCGCGGGCCCGGCTGCCTTCCTGCTCCAGTCGGCGGGGCAGGGCGCTACGTCGTGTGACGTCTGGGCCTCGG
TGCCGGGCCCAGGTGAAGGT

Product: cell wall endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MAPCVSSRARGALRVFLLAVLLSGCVGTRASSVAGPDTGLDAVSREDETAEVTDAAERTTPLPFSLRGVHDEPELVAVRH
LVAPGETMYRISRTYGLTVEELGAANGIKAPWALAVGQELSIPGVERSVPVRALAEADPEPVRTSTSAGGRRSVPTSGRR
EEPPSRSRSLSRPASAAGRPRVATQGQLDWPMRGVLYGRFGKKGKEPHDGIDLAAPSGTPVKTAQEGTVLYAGEQRGYGN
IVIVEHTNKLITLYAHNRDLRVRTGQKVRREQVIATVGESGRTSGPHLHFEVRLDGKPVDPLDFLGPMPSS

Sequences:

>Translated_311_residues
MAPCVSSRARGALRVFLLAVLLSGCVGTRASSVAGPDTGLDAVSREDETAEVTDAAERTTPLPFSLRGVHDEPELVAVRH
LVAPGETMYRISRTYGLTVEELGAANGIKAPWALAVGQELSIPGVERSVPVRALAEADPEPVRTSTSAGGRRSVPTSGRR
EEPPSRSRSLSRPASAAGRPRVATQGQLDWPMRGVLYGRFGKKGKEPHDGIDLAAPSGTPVKTAQEGTVLYAGEQRGYGN
IVIVEHTNKLITLYAHNRDLRVRTGQKVRREQVIATVGESGRTSGPHLHFEVRLDGKPVDPLDFLGPMPSS
>Mature_310_residues
APCVSSRARGALRVFLLAVLLSGCVGTRASSVAGPDTGLDAVSREDETAEVTDAAERTTPLPFSLRGVHDEPELVAVRHL
VAPGETMYRISRTYGLTVEELGAANGIKAPWALAVGQELSIPGVERSVPVRALAEADPEPVRTSTSAGGRRSVPTSGRRE
EPPSRSRSLSRPASAAGRPRVATQGQLDWPMRGVLYGRFGKKGKEPHDGIDLAAPSGTPVKTAQEGTVLYAGEQRGYGNI
VIVEHTNKLITLYAHNRDLRVRTGQKVRREQVIATVGESGRTSGPHLHFEVRLDGKPVDPLDFLGPMPSS

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=232, Percent_Identity=35.3448275862069, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789099, Length=259, Percent_Identity=30.8880308880309, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI87082297, Length=147, Percent_Identity=37.4149659863946, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=42.7083333333333, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 33172; Mature: 33041

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPCVSSRARGALRVFLLAVLLSGCVGTRASSVAGPDTGLDAVSREDETAEVTDAAERTT
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCC
PLPFSLRGVHDEPELVAVRHLVAPGETMYRISRTYGLTVEELGAANGIKAPWALAVGQEL
CCCEEECCCCCCCHHEEEHHHHCCCHHHEEEHHHHCCCHHHHCCCCCCCCCEEEECCCCC
SIPGVERSVPVRALAEADPEPVRTSTSAGGRRSVPTSGRREEPPSRSRSLSRPASAAGRP
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHCCCC
RVATQGQLDWPMRGVLYGRFGKKGKEPHDGIDLAAPSGTPVKTAQEGTVLYAGEQRGYGN
CCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCC
IVIVEHTNKLITLYAHNRDLRVRTGQKVRREQVIATVGESGRTSGPHLHFEVRLDGKPVD
EEEEEECCEEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC
PLDFLGPMPSS
HHHHCCCCCCC
>Mature Secondary Structure 
APCVSSRARGALRVFLLAVLLSGCVGTRASSVAGPDTGLDAVSREDETAEVTDAAERTT
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCC
PLPFSLRGVHDEPELVAVRHLVAPGETMYRISRTYGLTVEELGAANGIKAPWALAVGQEL
CCCEEECCCCCCCHHEEEHHHHCCCHHHEEEHHHHCCCHHHHCCCCCCCCCEEEECCCCC
SIPGVERSVPVRALAEADPEPVRTSTSAGGRRSVPTSGRREEPPSRSRSLSRPASAAGRP
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHCCCC
RVATQGQLDWPMRGVLYGRFGKKGKEPHDGIDLAAPSGTPVKTAQEGTVLYAGEQRGYGN
CCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCC
IVIVEHTNKLITLYAHNRDLRVRTGQKVRREQVIATVGESGRTSGPHLHFEVRLDGKPVD
EEEEEECCEEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC
PLDFLGPMPSS
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]