Click here to switch to the map view.

The map label for this gene is yscJ [H]

Identifier: 108759060

GI number: 108759060

Start: 2845604

End: 2846422

Strand: Direct

Name: yscJ [H]

Synonym: MXAN_2439

Alternate gene names: 108759060

Gene position: 2845604-2846422 (Clockwise)

Preceding gene: 108761568

Following gene: 108763869

Centisome position: 31.13

GC content: 67.28

Gene sequence:

>819_bases
ATGATTCGCCGACCGCACGCGTTTGCCGCCTCGCTTCTCGCCCTTCTCTTCCTGACGGGCTGCCACATTGAACTCCAGCA
CGCGCTGAGCGAAGCGGACGCCAACGAAATCTACGTCCTGCTCAGCAAGAACGGCATCAACGCCAAGAAGGAAAAGGAAG
AAGGCGGCAACGAGGTGCGGTTCATGATCACCGTGCCCAAGGCGGATGCCGCGCAGGCGGCGGAGCTGCTCAAGCTCAAT
TCGCTGCCGCGGCCGGTGGAGAAGGGCCTGGCCCATTTCGCCAAGGGCAGCATGGTGCCCACCGCGACGGAGGAGCGCGC
CATGCTCCTCAAGGCGATGGGCGGCGAGGTCTCCAATGCGCTGAATCAGATCGACGGCGTGCTGGAAGCGCGCGCCATCG
TGATGATTCCGGAGAACAATGACCTCACGCAGCCGGAGAACAAGCCGATGCCGTCCGCGTCGGTGTTCATCAAGTACCGC
CCGGGCGAGGGGGGCAAGCCGCCCATCGACACCGCCGTGGTGCAGCAGTTCGCGGCCACCGCGGTGCCGGAGCTGAAGGC
CAGCGCGGTGACGGTGCTGATGACGCAGGCCCTGCCGCCGTCGGCGGAGACGGACGCGGAGAGCCGCCTGCAGGACGTGC
TGGGGCTGCGCATGACGGCGGCCAGCGCCAGCCAGTTCAAGGTGATGTTCGCGGGCGCCTTCGTGCTGGTGCTGGCGATG
CTGGGCCTGACGATGTGGACCTTCATGCGCGGCGGCTCCAGCAGCGCCCCTGCCACGCGCGCTGGAGCGCGTACCCGCGG
TCGTCCTCCCGAGGCTTGA

Upstream 100 bases:

>100_bases
TCCCGGCGGCGCGGCCTCAAGAAGGGCGGTCCCTCCCTCTACGAGCGGGAGGGGGCGCCCTTCCGCGTTTTCCGGGGGCC
TAGTAAGCTCCGACCCGCCC

Downstream 100 bases:

>100_bases
CGTCACCGCCCCTCACGGTGGGGCTTCCCTCCTTCTCCCAGCGGGCGTCCGTGGGGCCCGCGAGGTGACGTTTGGACTCG
TTCTTCACCTCGCTCAACAA

Product: YscJ/HrcJ family type III secretion apparatus lipoprotein

Products: NA

Alternate protein names: Lipoprotein ylpB [H]

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MIRRPHAFAASLLALLFLTGCHIELQHALSEADANEIYVLLSKNGINAKKEKEEGGNEVRFMITVPKADAAQAAELLKLN
SLPRPVEKGLAHFAKGSMVPTATEERAMLLKAMGGEVSNALNQIDGVLEARAIVMIPENNDLTQPENKPMPSASVFIKYR
PGEGGKPPIDTAVVQQFAATAVPELKASAVTVLMTQALPPSAETDAESRLQDVLGLRMTAASASQFKVMFAGAFVLVLAM
LGLTMWTFMRGGSSSAPATRAGARTRGRPPEA

Sequences:

>Translated_272_residues
MIRRPHAFAASLLALLFLTGCHIELQHALSEADANEIYVLLSKNGINAKKEKEEGGNEVRFMITVPKADAAQAAELLKLN
SLPRPVEKGLAHFAKGSMVPTATEERAMLLKAMGGEVSNALNQIDGVLEARAIVMIPENNDLTQPENKPMPSASVFIKYR
PGEGGKPPIDTAVVQQFAATAVPELKASAVTVLMTQALPPSAETDAESRLQDVLGLRMTAASASQFKVMFAGAFVLVLAM
LGLTMWTFMRGGSSSAPATRAGARTRGRPPEA
>Mature_272_residues
MIRRPHAFAASLLALLFLTGCHIELQHALSEADANEIYVLLSKNGINAKKEKEEGGNEVRFMITVPKADAAQAAELLKLN
SLPRPVEKGLAHFAKGSMVPTATEERAMLLKAMGGEVSNALNQIDGVLEARAIVMIPENNDLTQPENKPMPSASVFIKYR
PGEGGKPPIDTAVVQQFAATAVPELKASAVTVLMTQALPPSAETDAESRLQDVLGLRMTAASASQFKVMFAGAFVLVLAM
LGLTMWTFMRGGSSSAPATRAGARTRGRPPEA

Specific function: Required for the export process of the Yop proteins [H]

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 28948; Mature: 28948

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRPHAFAASLLALLFLTGCHIELQHALSEADANEIYVLLSKNGINAKKEKEEGGNEVR
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHCCCCEEE
FMITVPKADAAQAAELLKLNSLPRPVEKGLAHFAKGSMVPTATEERAMLLKAMGGEVSNA
EEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH
LNQIDGVLEARAIVMIPENNDLTQPENKPMPSASVFIKYRPGEGGKPPIDTAVVQQFAAT
HHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
AVPELKASAVTVLMTQALPPSAETDAESRLQDVLGLRMTAASASQFKVMFAGAFVLVLAM
HCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGLTMWTFMRGGSSSAPATRAGARTRGRPPEA
HHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCC
>Mature Secondary Structure
MIRRPHAFAASLLALLFLTGCHIELQHALSEADANEIYVLLSKNGINAKKEKEEGGNEVR
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHCCCCEEE
FMITVPKADAAQAAELLKLNSLPRPVEKGLAHFAKGSMVPTATEERAMLLKAMGGEVSNA
EEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH
LNQIDGVLEARAIVMIPENNDLTQPENKPMPSASVFIKYRPGEGGKPPIDTAVVQQFAAT
HHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
AVPELKASAVTVLMTQALPPSAETDAESRLQDVLGLRMTAASASQFKVMFAGAFVLVLAM
HCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGLTMWTFMRGGSSSAPATRAGARTRGRPPEA
HHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1860816 [H]