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The map label for this gene is 108758978

Identifier: 108758978

GI number: 108758978

Start: 6853112

End: 6853705

Strand: Direct

Name: 108758978

Synonym: MXAN_5506

Alternate gene names: NA

Gene position: 6853112-6853705 (Clockwise)

Preceding gene: 108758095

Following gene: 108759750

Centisome position: 74.98

GC content: 70.03

Gene sequence:

>594_bases
GTGGAACGACACGAGAGCAGGACAACTGAGAGCCCCGCCGCGCCGGGCGATGGGTACCGCCGTCAATTCGACGCGTTCGC
GCGAGCACGGCGTCCGGCGTTGGTTCGAATCGCCCGGCGATTGTGCTCGGGTGGAGCCATCGACCCGGAGGACCTGGTGC
AGGAGACGCTGGAGCGCGCCTACCGCCACTTCGACAAGCTGATGGCGGAGAACGCGGGGGCGGTGAGCGTCTGGTTGAGC
ACCACGATGAGCAACCGCTTCCTGGACCACTGCCGGCGGCGGCGCACCGAGGTCATGGGTGCGCCCATGCTGCGCCTGGT
GCAGGACCTGGACGCCGAAGGCGAAGCGGCGCCCCAGGAGCGGTGGGAGCGCGTGTCTCGCGACGAGTTCCAGCGGGCCA
TCGACCAGTTGCGCCCGCCGCACCTGCGGGACGCCTACCGGCTGCACGTCGCGGGGTTGCGGTATCGGGCCATTGCCCAG
CAACTCCGCTCGACGGAAGGGACGGTGGGCCGGTGGCTCACGGAAGCGCGGCAGGCGCTGCGCGAGCTGCTGGGCGGCAA
GGACGCCTCGCACGAAGGCATGGCTGAATCATGA

Upstream 100 bases:

>100_bases
ACCCAGGCACACCCTCGGCCGATAACGCACTGCGCCGTCCGATTTCACCGAAGGGAATTTCCCCGGCCCGTTCTCACCGT
GCGCAGGGAGCAGCCCACCG

Downstream 100 bases:

>100_bases
GCAGCGTCTGCGACAACCTGGAACGTTTCGTCGACGGGGAGATGCTCCCCGCGGACGCGGAGAACTTCCGCCACCACCTG
GCCCGCTGCGCGGCGTGCGA

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MERHESRTTESPAAPGDGYRRQFDAFARARRPALVRIARRLCSGGAIDPEDLVQETLERAYRHFDKLMAENAGAVSVWLS
TTMSNRFLDHCRRRRTEVMGAPMLRLVQDLDAEGEAAPQERWERVSRDEFQRAIDQLRPPHLRDAYRLHVAGLRYRAIAQ
QLRSTEGTVGRWLTEARQALRELLGGKDASHEGMAES

Sequences:

>Translated_197_residues
MERHESRTTESPAAPGDGYRRQFDAFARARRPALVRIARRLCSGGAIDPEDLVQETLERAYRHFDKLMAENAGAVSVWLS
TTMSNRFLDHCRRRRTEVMGAPMLRLVQDLDAEGEAAPQERWERVSRDEFQRAIDQLRPPHLRDAYRLHVAGLRYRAIAQ
QLRSTEGTVGRWLTEARQALRELLGGKDASHEGMAES
>Mature_197_residues
MERHESRTTESPAAPGDGYRRQFDAFARARRPALVRIARRLCSGGAIDPEDLVQETLERAYRHFDKLMAENAGAVSVWLS
TTMSNRFLDHCRRRRTEVMGAPMLRLVQDLDAEGEAAPQERWERVSRDEFQRAIDQLRPPHLRDAYRLHVAGLRYRAIAQ
QLRSTEGTVGRWLTEARQALRELLGGKDASHEGMAES

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22538; Mature: 22538

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERHESRTTESPAAPGDGYRRQFDAFARARRPALVRIARRLCSGGAIDPEDLVQETLERA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YRHFDKLMAENAGAVSVWLSTTMSNRFLDHCRRRRTEVMGAPMLRLVQDLDAEGEAAPQE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHH
RWERVSRDEFQRAIDQLRPPHLRDAYRLHVAGLRYRAIAQQLRSTEGTVGRWLTEARQAL
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RELLGGKDASHEGMAES
HHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MERHESRTTESPAAPGDGYRRQFDAFARARRPALVRIARRLCSGGAIDPEDLVQETLERA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YRHFDKLMAENAGAVSVWLSTTMSNRFLDHCRRRRTEVMGAPMLRLVQDLDAEGEAAPQE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHH
RWERVSRDEFQRAIDQLRPPHLRDAYRLHVAGLRYRAIAQQLRSTEGTVGRWLTEARQAL
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RELLGGKDASHEGMAES
HHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA