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The map label for this gene is yciR [C]

Identifier: 108758948

GI number: 108758948

Start: 2943958

End: 2945205

Strand: Reverse

Name: yciR [C]

Synonym: MXAN_2530

Alternate gene names: 108758948

Gene position: 2945205-2943958 (Counterclockwise)

Preceding gene: 108759848

Following gene: 108762240

Centisome position: 32.22

GC content: 67.71

Gene sequence:

>1248_bases
TTGCAGCTTCTTTCGGGGAGGGCATGGAGCCTGCGGTGTGTTCGGCTACAATTTCCCCACATGAGCCTGCCCCTCTCCTC
CGCACCAGCGCCCGCCTGGCTGTGGAAAGGTGACGAGCCGAGCGTCACCTCGGTGTTTCAGCCCATCGTGGACTTGCTGC
GTGGCGAGGTCATCGGGCACGAAGTGCTTTCGCGAGGACCCGGCGAGTTCCGCGAGCCGCACGTGCTCTTCACGCAGGCG
CGATTGGAAGGCTACACGTGGGAGCTGGAGCGCGCGTGCTGGACGTCCGCGCTGCGCTGCATCTCCACGCTGCCGGAGGC
GCAACGCAGCGCGCCCTTCTTCTTCAACGTCAGCCCGGACGTGCTGAGCGACCCGCGATTCGGGGATGGCTCCACGGAGG
AGCTGCTCGCGCGCTACGGGCTGAACCCGAAGAACCTGGTGCTCGAAATCACGGAGAAGGCGGCGTTCGAGGACAACGCG
CTGCTGCAACGGCTGACGCGACAGTGTTCGGCGCTGGGCTTCGGCATCGCGCTGGATGACTTCGGCGCGGGGCACTCCGG
ACTGGTGACGCTGGTGAACAGCGCGCCGCAGTTCATCAAGCTGGACCAGGCGCTGGTGCGGGACATCCACCGACACAGCT
ACCAGCAGCACCTGGTGAAGTCGCTGGTGTCCTTCGCGGCCAGCGTCAACGCGACGCTGATTGCGGAAGGCGTGGAGACG
TGGAACGAGTTGGCCGTGCTGCTCCGCCTGGGCATCCGGCACGCGCAGGGCTACCTGGTGGCCCGCCCCGCTCCCGTCCC
CGTGCTTCCCAGCGTCGAGTTCGAGGCGCGGCGCCATGAAGCCATGCGCGCGCTCGACTTCCGCGAGGACGAGGACGACG
AGACGGTGGGCAGCATCGTCATCCGCCGCAACTGCGTGGAGCGGCCCGTGACGCCCGAGGAGTTGGAGCGGCTGTTCCAG
CAGAAGGCCGACGTGGACCATGTCGCCGTGCTGCATAGCGAACGGCTGGAGGCGCTGGTGTTGCGGCGCGCGACGGCCAC
GAAGGGCGCGGCGCAGGTGGCTCCGCTCATCGTCGAGGACCGGATGGCGCTCACCACCCTGGCGCGGCTCGCCATGGAGC
GCGCGCCCGAAGCGCTCTATGACCCGGTGGTCGTCACGGATGCCCAGAAGCGATTCCTGGGTACCGTCACCATGCAGCAA
CTCATTCGCCGCATCACGGAGTTGCTGGAACGGCGCACGCCGGCCTGA

Upstream 100 bases:

>100_bases
AAGCCCGGCGTCTGGCCCGGCAAGCGAGCAGCCGAGGGTCGGCGAGTCTTGAGCGCCGGGGTTCCGGCCCTGGTGCACTG
CCCCCCCGTGACATGCGGCC

Downstream 100 bases:

>100_bases
TGACGGACACGGCTGCGGCACGATGCGCACGACGCGGTCGTCCGACTTTGTTGCCTCAGTTCACGCGGGCACCGCCGCTC
CGTCCCTCTGCCTGCGAACA

Product: EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MQLLSGRAWSLRCVRLQFPHMSLPLSSAPAPAWLWKGDEPSVTSVFQPIVDLLRGEVIGHEVLSRGPGEFREPHVLFTQA
RLEGYTWELERACWTSALRCISTLPEAQRSAPFFFNVSPDVLSDPRFGDGSTEELLARYGLNPKNLVLEITEKAAFEDNA
LLQRLTRQCSALGFGIALDDFGAGHSGLVTLVNSAPQFIKLDQALVRDIHRHSYQQHLVKSLVSFAASVNATLIAEGVET
WNELAVLLRLGIRHAQGYLVARPAPVPVLPSVEFEARRHEAMRALDFREDEDDETVGSIVIRRNCVERPVTPEELERLFQ
QKADVDHVAVLHSERLEALVLRRATATKGAAQVAPLIVEDRMALTTLARLAMERAPEALYDPVVVTDAQKRFLGTVTMQQ
LIRRITELLERRTPA

Sequences:

>Translated_415_residues
MQLLSGRAWSLRCVRLQFPHMSLPLSSAPAPAWLWKGDEPSVTSVFQPIVDLLRGEVIGHEVLSRGPGEFREPHVLFTQA
RLEGYTWELERACWTSALRCISTLPEAQRSAPFFFNVSPDVLSDPRFGDGSTEELLARYGLNPKNLVLEITEKAAFEDNA
LLQRLTRQCSALGFGIALDDFGAGHSGLVTLVNSAPQFIKLDQALVRDIHRHSYQQHLVKSLVSFAASVNATLIAEGVET
WNELAVLLRLGIRHAQGYLVARPAPVPVLPSVEFEARRHEAMRALDFREDEDDETVGSIVIRRNCVERPVTPEELERLFQ
QKADVDHVAVLHSERLEALVLRRATATKGAAQVAPLIVEDRMALTTLARLAMERAPEALYDPVVVTDAQKRFLGTVTMQQ
LIRRITELLERRTPA
>Mature_415_residues
MQLLSGRAWSLRCVRLQFPHMSLPLSSAPAPAWLWKGDEPSVTSVFQPIVDLLRGEVIGHEVLSRGPGEFREPHVLFTQA
RLEGYTWELERACWTSALRCISTLPEAQRSAPFFFNVSPDVLSDPRFGDGSTEELLARYGLNPKNLVLEITEKAAFEDNA
LLQRLTRQCSALGFGIALDDFGAGHSGLVTLVNSAPQFIKLDQALVRDIHRHSYQQHLVKSLVSFAASVNATLIAEGVET
WNELAVLLRLGIRHAQGYLVARPAPVPVLPSVEFEARRHEAMRALDFREDEDDETVGSIVIRRNCVERPVTPEELERLFQ
QKADVDHVAVLHSERLEALVLRRATATKGAAQVAPLIVEDRMALTTLARLAMERAPEALYDPVVVTDAQKRFLGTVTMQQ
LIRRITELLERRTPA

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87082096, Length=171, Percent_Identity=32.7485380116959, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787541, Length=128, Percent_Identity=42.1875, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI226510982, Length=243, Percent_Identity=30.4526748971193, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788849, Length=223, Percent_Identity=29.5964125560538, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1790496, Length=234, Percent_Identity=26.9230769230769, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081921, Length=240, Percent_Identity=28.3333333333333, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787055, Length=227, Percent_Identity=30.8370044052863, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=29.957805907173, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788502, Length=228, Percent_Identity=28.9473684210526, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081743, Length=223, Percent_Identity=25.1121076233184, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081980, Length=230, Percent_Identity=27.3913043478261, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787410, Length=236, Percent_Identity=25.8474576271186, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786507, Length=136, Percent_Identity=30.1470588235294, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 46369; Mature: 46369

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLLSGRAWSLRCVRLQFPHMSLPLSSAPAPAWLWKGDEPSVTSVFQPIVDLLRGEVIGH
CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH
EVLSRGPGEFREPHVLFTQARLEGYTWELERACWTSALRCISTLPEAQRSAPFFFNVSPD
HHHHCCCCCCCCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCCH
VLSDPRFGDGSTEELLARYGLNPKNLVLEITEKAAFEDNALLQRLTRQCSALGFGIALDD
HCCCCCCCCCCHHHHHHHHCCCHHHEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCEEECC
FGAGHSGLVTLVNSAPQFIKLDQALVRDIHRHSYQQHLVKSLVSFAASVNATLIAEGVET
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
WNELAVLLRLGIRHAQGYLVARPAPVPVLPSVEFEARRHEAMRALDFREDEDDETVGSIV
HHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
IRRNCVERPVTPEELERLFQQKADVDHVAVLHSERLEALVLRRATATKGAAQVAPLIVED
HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RMALTTLARLAMERAPEALYDPVVVTDAQKRFLGTVTMQQLIRRITELLERRTPA
HHHHHHHHHHHHHHCCHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQLLSGRAWSLRCVRLQFPHMSLPLSSAPAPAWLWKGDEPSVTSVFQPIVDLLRGEVIGH
CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH
EVLSRGPGEFREPHVLFTQARLEGYTWELERACWTSALRCISTLPEAQRSAPFFFNVSPD
HHHHCCCCCCCCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCCH
VLSDPRFGDGSTEELLARYGLNPKNLVLEITEKAAFEDNALLQRLTRQCSALGFGIALDD
HCCCCCCCCCCHHHHHHHHCCCHHHEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCEEECC
FGAGHSGLVTLVNSAPQFIKLDQALVRDIHRHSYQQHLVKSLVSFAASVNATLIAEGVET
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
WNELAVLLRLGIRHAQGYLVARPAPVPVLPSVEFEARRHEAMRALDFREDEDDETVGSIV
HHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
IRRNCVERPVTPEELERLFQQKADVDHVAVLHSERLEALVLRRATATKGAAQVAPLIVED
HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RMALTTLARLAMERAPEALYDPVVVTDAQKRFLGTVTMQQLIRRITELLERRTPA
HHHHHHHHHHHHHHCCHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]