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The map label for this gene is rpmD

Identifier: 108758534

GI number: 108758534

Start: 3863403

End: 3863672

Strand: Direct

Name: rpmD

Synonym: MXAN_3317

Alternate gene names: 108758534

Gene position: 3863403-3863672 (Clockwise)

Preceding gene: 108760922

Following gene: 108758655

Centisome position: 42.27

GC content: 64.81

Gene sequence:

>270_bases
ATGGCGCTCAAGGTGAAGCTGGTGAAGAGCTTTGCGGGTGCGTCCAGCGACATGCTGGACACCATCCGTGGGCTGGGCCT
GAAGAAGTTCGGTGACGAGCGGCTCCTCAAGGACACGCCTGCGGTTCGCGGGATGGCGTTCAAGGTGAAGCACCTGGTCA
CCCTGGAAACCGTTTCCGGCGACGCGCCGGCGCCCAAGCGCCGCAAGCCCGCCAAGATTGCCCTGCGGGAGCGGGCGATC
GCGTATCAGGCCAAGCAGAACAAGGCCTGA

Upstream 100 bases:

>100_bases
CGCTGGCCTGAAGCTGCTGCGCAGCGCGGAGCAGGTTTCGCGTCTCCGTGGCAAGGACGTCGAGCCGGCGAAGCTCGCCG
GGGAGCAGAGGGGCTAGCCC

Downstream 100 bases:

>100_bases
GTCACGAGAGGATCGAGACGATGAGCACTCTGAACAAACTGCAGCGTCCGGCGCGCTCGTGGCACCGCAAGAAGCGCGTA
GGCCGCGGCCAGGGTAGTGG

Product: 50S ribosomal protein L30

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MALKVKLVKSFAGASSDMLDTIRGLGLKKFGDERLLKDTPAVRGMAFKVKHLVTLETVSGDAPAPKRRKPAKIALRERAI
AYQAKQNKA

Sequences:

>Translated_89_residues
MALKVKLVKSFAGASSDMLDTIRGLGLKKFGDERLLKDTPAVRGMAFKVKHLVTLETVSGDAPAPKRRKPAKIALRERAI
AYQAKQNKA
>Mature_88_residues
ALKVKLVKSFAGASSDMLDTIRGLGLKKFGDERLLKDTPAVRGMAFKVKHLVTLETVSGDAPAPKRRKPAKIALRERAIA
YQAKQNKA

Specific function: Unknown

COG id: COG1841

COG function: function code J; Ribosomal protein L30/L7E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30_MYXXD (Q1D757)

Other databases:

- EMBL:   CP000113
- RefSeq:   YP_631516.1
- STRING:   Q1D757
- GeneID:   4101325
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_3317
- TIGR:   MXAN_3317
- eggNOG:   NOG119220
- HOGENOM:   HBG690556
- ProtClustDB:   PRK05611
- BioCyc:   MXAN246197:MXAN_3317-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01371_B
- InterPro:   IPR005996
- InterPro:   IPR016082
- Gene3D:   G3DSA:3.30.1390.20
- TIGRFAMs:   TIGR01308

Pfam domain/function: PF00327 Ribosomal_L30; SSF55129 Ribosomal_L30

EC number: NA

Molecular weight: Translated: 9720; Mature: 9588

Theoretical pI: Translated: 11.27; Mature: 11.27

Prosite motif: PS00634 RIBOSOMAL_L30

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALKVKLVKSFAGASSDMLDTIRGLGLKKFGDERLLKDTPAVRGMAFKVKHLVTLETVSG
CCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCCCHHEEHHHEEEEEECCC
DAPAPKRRKPAKIALRERAIAYQAKQNKA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALKVKLVKSFAGASSDMLDTIRGLGLKKFGDERLLKDTPAVRGMAFKVKHLVTLETVSG
CCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCCCHHEEHHHEEEEEECCC
DAPAPKRRKPAKIALRERAIAYQAKQNKA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA