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The map label for this gene is sodB [H]

Identifier: 108758510

GI number: 108758510

Start: 6041643

End: 6042224

Strand: Reverse

Name: sodB [H]

Synonym: MXAN_4826

Alternate gene names: 108758510

Gene position: 6042224-6041643 (Counterclockwise)

Preceding gene: 108757967

Following gene: 108760908

Centisome position: 66.11

GC content: 63.23

Gene sequence:

>582_bases
ATGTCGTTCACGTTGCCTGATCTGCCTTACAAGAAGGACGCCCTCGCGCCGCACATGAGCGCGGAGACGCTCGAGTTCCA
CCACGACAAGCACCACGCCGCCTACGTCAACAACCTGAACAAGCTCCTGGACGGCAAGCCGGAGGCGAACAAGTCGCTGG
AGGAGGTCATCCTCAGCAGCGACGGTGGCGTGTTCAACAACGCCGCGCAGGTGTGGAACCACACCTTCTTCTGGCAGTGC
ATGAAGCCCGCTGGCGGCGGCAAGCCGACGGGTGAGCTCGCGGCGGCCATCGACCGTGACTTCGGCTCCTTCGAGAAGTT
CAAGGAGGAGTTCTCCACGGCCGCGGCCACGCAGTTCGGCTCGGGCTGGGCCTGGCTGGTGCTGGAGGGCGGCAAGCTCA
AGGTCACCAAGACGGGCAACGCGGACCTGCCGATGAAGCACGGCCAGAAGGCCCTGCTGACCATCGACGTGTGGGAGCAC
GCGTATTACATCGACTTCCGGAACGCGCGTCCGAAGTTCATCGAGACGTTCCTGACGCACCTGGTGAACTGGGACTTCGT
GGCCCAGAACTTCAAGGGCTAG

Upstream 100 bases:

>100_bases
GAGCCCCTTCTTTATTGGGCGCGGGGCTATCGAACCGTGACCTCTCTGCCGCCGTCTGATAGCGATGGCGCCTGACCTCT
CACACCGAAAGGAAACGACC

Downstream 100 bases:

>100_bases
TTCGCGCCGCACGGCGTCCATCGCTGGCCTGGGCGGCCTCGGAGGTCATTCGAGGCCGCTCAACGCAATCCGCCCCTCAG
CTTCCACGCGGAGCACCACC

Product: superoxide dismutase, Fe

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSFTLPDLPYKKDALAPHMSAETLEFHHDKHHAAYVNNLNKLLDGKPEANKSLEEVILSSDGGVFNNAAQVWNHTFFWQC
MKPAGGGKPTGELAAAIDRDFGSFEKFKEEFSTAAATQFGSGWAWLVLEGGKLKVTKTGNADLPMKHGQKALLTIDVWEH
AYYIDFRNARPKFIETFLTHLVNWDFVAQNFKG

Sequences:

>Translated_193_residues
MSFTLPDLPYKKDALAPHMSAETLEFHHDKHHAAYVNNLNKLLDGKPEANKSLEEVILSSDGGVFNNAAQVWNHTFFWQC
MKPAGGGKPTGELAAAIDRDFGSFEKFKEEFSTAAATQFGSGWAWLVLEGGKLKVTKTGNADLPMKHGQKALLTIDVWEH
AYYIDFRNARPKFIETFLTHLVNWDFVAQNFKG
>Mature_192_residues
SFTLPDLPYKKDALAPHMSAETLEFHHDKHHAAYVNNLNKLLDGKPEANKSLEEVILSSDGGVFNNAAQVWNHTFFWQCM
KPAGGGKPTGELAAAIDRDFGSFEKFKEEFSTAAATQFGSGWAWLVLEGGKLKVTKTGNADLPMKHGQKALLTIDVWEHA
YYIDFRNARPKFIETFLTHLVNWDFVAQNFKG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=42.713567839196, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=42.713567839196, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI67782309, Length=191, Percent_Identity=37.696335078534, Blast_Score=124, Evalue=8e-29,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=60.9375, Blast_Score=245, Evalue=1e-66,
Organism=Escherichia coli, GI1790342, Length=205, Percent_Identity=47.8048780487805, Blast_Score=177, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI17506561, Length=193, Percent_Identity=38.860103626943, Blast_Score=134, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=192, Percent_Identity=38.0208333333333, Blast_Score=129, Evalue=8e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=34.6153846153846, Blast_Score=109, Evalue=3e-25,
Organism=Drosophila melanogaster, GI17136812, Length=194, Percent_Identity=38.659793814433, Blast_Score=132, Evalue=2e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21646; Mature: 21514

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTLPDLPYKKDALAPHMSAETLEFHHDKHHAAYVNNLNKLLDGKPEANKSLEEVILSS
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
DGGVFNNAAQVWNHTFFWQCMKPAGGGKPTGELAAAIDRDFGSFEKFKEEFSTAAATQFG
CCCCCCCHHHHHCCHHEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
SGWAWLVLEGGKLKVTKTGNADLPMKHGQKALLTIDVWEHAYYIDFRNARPKFIETFLTH
CCEEEEEEECCEEEEEECCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHH
LVNWDFVAQNFKG
HHCHHHHHCCCCC
>Mature Secondary Structure 
SFTLPDLPYKKDALAPHMSAETLEFHHDKHHAAYVNNLNKLLDGKPEANKSLEEVILSS
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
DGGVFNNAAQVWNHTFFWQCMKPAGGGKPTGELAAAIDRDFGSFEKFKEEFSTAAATQFG
CCCCCCCHHHHHCCHHEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
SGWAWLVLEGGKLKVTKTGNADLPMKHGQKALLTIDVWEHAYYIDFRNARPKFIETFLTH
CCEEEEEEECCEEEEEECCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHH
LVNWDFVAQNFKG
HHCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7860607 [H]