| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is lolC [H]
Identifier: 108758232
GI number: 108758232
Start: 5924617
End: 5926986
Strand: Reverse
Name: lolC [H]
Synonym: MXAN_4730
Alternate gene names: 108758232
Gene position: 5926986-5924617 (Counterclockwise)
Preceding gene: 108757457
Following gene: 108758522
Centisome position: 64.85
GC content: 68.4
Gene sequence:
>2370_bases GTGCACTCCGCCGAACGGCAGACCGTCCATCGCTGGACCTTCATCTGGATTGGGGCGCTGGTCGCCCTGGTGGGCTTCAG CCTGCTCGGGGTGGCGCTCACGTCCTCTCAAGCTTGGCTGGAGACCAGCTCCTCCCTGGGGCTGTCCCTGCTGGGGTGGG GCGGGCTGGTCCAGGCCCTCAACGCGCTGCTGCTCGTGTCCGAGCAGCCCGTCGCGACGGTGCCCAACACGGGCCTCCTC GTCGCGGGCTCCGTCGTCTGGCTCGCGGGGTGGGCGCTCATCGCCGCCGGCATCCGCCGCGCGCCGGAGCCCACCGAAGG GCCCAGCCCGGCTGCGGGCGCCACGCTGTACCCGCGCCTGGCGCGCTACCGGGACTTCTACTGGAGCACCCTGGGCGCCT ACGGCGGCGGCATGCTGCTGGCGGAGGTGGTCCTCGTCCTCCTGCAGACGGTGCTGTCCAGCGGCGTGTCCGCCACGGAG CTGGGCTCGGCGGGGAAGGGCGCCAGCGGCGGTTTGTCGCTGCCGCCCACCGGGGCCTTCGCCATCGCGCTGCTCGCGGG TGGCATGGTGGCCTTCATCTCCGGCTTCATCGGCGCGTCGCGCGCGCAGCGGCTGTCGCTGCCCGAGGCCACCATCGGCG TGCTGTACCTGGGCCTGCCCATCCCCATCATCCTCACGTTGATGGAGCGGCTGCCCGGGCTGCAGCTCGCGCTGGGCTAC CGGCTGCGCGAGGTGACGTACGTCGCGGGGCTGATTGGCCGCCCGGAGCTGGGGTACTGGCTCGTCTTCACCTTCCTGGT GCTGGCGCTGGTGCTGGGCATCAACACCGGCTTCATCGCCGCCGGCAGCGGCCGGGTGGACCTGAAGCTGGGGTTCGAGC TCTTTGTCGCGCGCCGGCACGTGGCGGTGTTCCGGCCGTCGCTGCTGCTGGGGACGCTGGCGGTGCTGATGCTCGGCATC ATCCCCCCGCTGCTCATCTACTTCATCATTCGCTCGGCGGAAGCGGCCGTGGAGCGCACCCGCATTCGCGAGCTGGGCCT GAAGGACCCGTTGGCGGCCGCCTCCGACCTCAACCGCCTCAAGCTTCGGGAGCAGTCGCCCACCATGATGATGACCGCCC TGTCCGTGGGCGGCGTGGGCGTGGGGGTGATGGCGCTCATCATCGTCCTGTCGGTGATGAGCGGCTTCGAGGCCGACCTG CAGCAGAAAATCCTGGGCACCAACGCGCACGCCGTGGTGTCCAAGTACGCGGGCGACCTGCCCGAGTACGCCAAGGTCAT GGAGTCCGTCCGCAAGGTGCCCGGTGTCGTGGGACAGACGCCCTTCATCATCAACCAGGTGATGATTGCGTCCGAGGGCA ACGTGGACGGCGTCATCATCAAGGGCATCGACCCGGGCACGGTGGGCGAGGTGACGGACCTGCCCAAGAACATCCTCGGT GGCGGCTCGCTCGACATCCTCTATACGCCGGAGAAGATCGTCCACCGCGGCCTGCCGGACGAGGAGCCCGCGGAGGAGAG TGGGGTCGAGGAGGACGACATCATCCGCCGCTCCGGGACGCCCAAGAAGGCGCCGGTGCTGCCGGGCATCGTCATTGGCC GTGAGCTGGCGGCGTCGCTGCGCGTGGTGGTGGGAGACCGGGTGAACGTCGTCTCCCCGCTGGGCACCGAGCTGGGGCCG TCCGGCCCGATTCCGAAGAGCCGCGCCTTCCGCGTGGCGGCCATCTTCTACTCGGGCATGTACGAGTACGACTCCAAGTT CGTCTACATCCTCCTCAACGAGGCCCAGGACTTCTTCGACGTGAAGGGGGCCACGGGCATCGAACTGAAGGTGGCGGACA TCGACGATGCGCGGCGCATCGCCTCGCAGGTGGTGAAGGTGCTGGGCGGCTATCCCTACCGGGCACGCGACTGGGGAGAG ATGAACAAGAACCTCTTCTCCGCGCTGCGCCTGGAGAAGCTGGTGATGGGCATCATCCTCTCCATCATCATCATCGTGGC CGCGGGCCTCATCGTCGCTACCGTCATCATGCTGGTGCTGGAGAAGCGGAAGGAGATTTCCGTCCTCAAGGCACTGGGGG TCCCCGATGGCGGCATCGTGAAGATATTCCTCGCGGAGGGCCTGCAGATTGGCGTCGCGGGCGGCTTCCTCGGTCTGATT TCCGGCCTGTCCTGGTGCGTCTTCATCGAGAAGGTCGGCATCAAGCTGGACCCGGACGTCTATTACATCCCGGCGGTGCC GGTGCGCGTCGAGCCGGTGCAGACCGTGCTGGCCGTCGTCATCGCGGTGCTCGTCACCTACCTCGCCTCCATCTACCCGG CCCTCAAGGCCAGCAGTGTGGAGCCGGTGGAAGGCCTCAAGGCGGAGTAG
Upstream 100 bases:
>100_bases GATTGATCGGCTCGCCATGCTGTTCACGGATTCGCAGAGCATCCGGGACGTCATCCTGTTTCCCCTCCTCAAGCCACTGG CGAAGTAGCCAGGAGGCCGC
Downstream 100 bases:
>100_bases CCATGGCGCTCTTGTCCATCCGCAACGTCTTCAAGAGCTACTTCCTGCACGGCAAGCGCATCGACATCCTTCGAGGCGTC TCGCTGGACATCCAGCGGGG
Product: LolC/E family lipoprotein releasing system, transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 789; Mature: 789
Protein sequence:
>789_residues MHSAERQTVHRWTFIWIGALVALVGFSLLGVALTSSQAWLETSSSLGLSLLGWGGLVQALNALLLVSEQPVATVPNTGLL VAGSVVWLAGWALIAAGIRRAPEPTEGPSPAAGATLYPRLARYRDFYWSTLGAYGGGMLLAEVVLVLLQTVLSSGVSATE LGSAGKGASGGLSLPPTGAFAIALLAGGMVAFISGFIGASRAQRLSLPEATIGVLYLGLPIPIILTLMERLPGLQLALGY RLREVTYVAGLIGRPELGYWLVFTFLVLALVLGINTGFIAAGSGRVDLKLGFELFVARRHVAVFRPSLLLGTLAVLMLGI IPPLLIYFIIRSAEAAVERTRIRELGLKDPLAAASDLNRLKLREQSPTMMMTALSVGGVGVGVMALIIVLSVMSGFEADL QQKILGTNAHAVVSKYAGDLPEYAKVMESVRKVPGVVGQTPFIINQVMIASEGNVDGVIIKGIDPGTVGEVTDLPKNILG GGSLDILYTPEKIVHRGLPDEEPAEESGVEEDDIIRRSGTPKKAPVLPGIVIGRELAASLRVVVGDRVNVVSPLGTELGP SGPIPKSRAFRVAAIFYSGMYEYDSKFVYILLNEAQDFFDVKGATGIELKVADIDDARRIASQVVKVLGGYPYRARDWGE MNKNLFSALRLEKLVMGIILSIIIIVAAGLIVATVIMLVLEKRKEISVLKALGVPDGGIVKIFLAEGLQIGVAGGFLGLI SGLSWCVFIEKVGIKLDPDVYYIPAVPVRVEPVQTVLAVVIAVLVTYLASIYPALKASSVEPVEGLKAE
Sequences:
>Translated_789_residues MHSAERQTVHRWTFIWIGALVALVGFSLLGVALTSSQAWLETSSSLGLSLLGWGGLVQALNALLLVSEQPVATVPNTGLL VAGSVVWLAGWALIAAGIRRAPEPTEGPSPAAGATLYPRLARYRDFYWSTLGAYGGGMLLAEVVLVLLQTVLSSGVSATE LGSAGKGASGGLSLPPTGAFAIALLAGGMVAFISGFIGASRAQRLSLPEATIGVLYLGLPIPIILTLMERLPGLQLALGY RLREVTYVAGLIGRPELGYWLVFTFLVLALVLGINTGFIAAGSGRVDLKLGFELFVARRHVAVFRPSLLLGTLAVLMLGI IPPLLIYFIIRSAEAAVERTRIRELGLKDPLAAASDLNRLKLREQSPTMMMTALSVGGVGVGVMALIIVLSVMSGFEADL QQKILGTNAHAVVSKYAGDLPEYAKVMESVRKVPGVVGQTPFIINQVMIASEGNVDGVIIKGIDPGTVGEVTDLPKNILG GGSLDILYTPEKIVHRGLPDEEPAEESGVEEDDIIRRSGTPKKAPVLPGIVIGRELAASLRVVVGDRVNVVSPLGTELGP SGPIPKSRAFRVAAIFYSGMYEYDSKFVYILLNEAQDFFDVKGATGIELKVADIDDARRIASQVVKVLGGYPYRARDWGE MNKNLFSALRLEKLVMGIILSIIIIVAAGLIVATVIMLVLEKRKEISVLKALGVPDGGIVKIFLAEGLQIGVAGGFLGLI SGLSWCVFIEKVGIKLDPDVYYIPAVPVRVEPVQTVLAVVIAVLVTYLASIYPALKASSVEPVEGLKAE >Mature_789_residues MHSAERQTVHRWTFIWIGALVALVGFSLLGVALTSSQAWLETSSSLGLSLLGWGGLVQALNALLLVSEQPVATVPNTGLL VAGSVVWLAGWALIAAGIRRAPEPTEGPSPAAGATLYPRLARYRDFYWSTLGAYGGGMLLAEVVLVLLQTVLSSGVSATE LGSAGKGASGGLSLPPTGAFAIALLAGGMVAFISGFIGASRAQRLSLPEATIGVLYLGLPIPIILTLMERLPGLQLALGY RLREVTYVAGLIGRPELGYWLVFTFLVLALVLGINTGFIAAGSGRVDLKLGFELFVARRHVAVFRPSLLLGTLAVLMLGI IPPLLIYFIIRSAEAAVERTRIRELGLKDPLAAASDLNRLKLREQSPTMMMTALSVGGVGVGVMALIIVLSVMSGFEADL QQKILGTNAHAVVSKYAGDLPEYAKVMESVRKVPGVVGQTPFIINQVMIASEGNVDGVIIKGIDPGTVGEVTDLPKNILG GGSLDILYTPEKIVHRGLPDEEPAEESGVEEDDIIRRSGTPKKAPVLPGIVIGRELAASLRVVVGDRVNVVSPLGTELGP SGPIPKSRAFRVAAIFYSGMYEYDSKFVYILLNEAQDFFDVKGATGIELKVADIDDARRIASQVVKVLGGYPYRARDWGE MNKNLFSALRLEKLVMGIILSIIIIVAAGLIVATVIMLVLEKRKEISVLKALGVPDGGIVKIFLAEGLQIGVAGGFLGLI SGLSWCVFIEKVGIKLDPDVYYIPAVPVRVEPVQTVLAVVIAVLVTYLASIYPALKASSVEPVEGLKAE
Specific function: Part of an ATP-dependent transport system responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprotein) and
COG id: COG4591
COG function: function code M; ABC-type transport system, involved in lipoprotein release, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787360, Length=422, Percent_Identity=27.7251184834123, Blast_Score=135, Evalue=7e-33, Organism=Escherichia coli, GI1787362, Length=433, Percent_Identity=27.0207852193995, Blast_Score=130, Evalue=5e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 - InterPro: IPR011925 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 83542; Mature: 83542
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSAERQTVHRWTFIWIGALVALVGFSLLGVALTSSQAWLETSSSLGLSLLGWGGLVQAL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEHCCHHHHHHHH NALLLVSEQPVATVPNTGLLVAGSVVWLAGWALIAAGIRRAPEPTEGPSPAAGATLYPRL HHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH ARYRDFYWSTLGAYGGGMLLAEVVLVLLQTVLSSGVSATELGSAGKGASGGLSLPPTGAF HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHH AIALLAGGMVAFISGFIGASRAQRLSLPEATIGVLYLGLPIPIILTLMERLPGLQLALGY HHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEEHHHH RLREVTYVAGLIGRPELGYWLVFTFLVLALVLGINTGFIAAGSGRVDLKLGFELFVARRH HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECHHHHHHHHH VAVFRPSLLLGTLAVLMLGIIPPLLIYFIIRSAEAAVERTRIRELGLKDPLAAASDLNRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH KLREQSPTMMMTALSVGGVGVGVMALIIVLSVMSGFEADLQQKILGTNAHAVVSKYAGDL HCCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHCCC PEYAKVMESVRKVPGVVGQTPFIINQVMIASEGNVDGVIIKGIDPGTVGEVTDLPKNILG HHHHHHHHHHHHCCCCCCCCCHHHHHEEEECCCCCCEEEEECCCCCCCCCHHHCCHHHCC GGSLDILYTPEKIVHRGLPDEEPAEESGVEEDDIIRRSGTPKKAPVLPGIVIGRELAASL CCCEEEEECCHHHHHCCCCCCCCCHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH RVVVGDRVNVVSPLGTELGPSGPIPKSRAFRVAAIFYSGMYEYDSKFVYILLNEAQDFFD HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH VKGATGIELKVADIDDARRIASQVVKVLGGYPYRARDWGEMNKNLFSALRLEKLVMGIIL CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SIIIIVAAGLIVATVIMLVLEKRKEISVLKALGVPDGGIVKIFLAEGLQIGVAGGFLGLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEHHHHHHHH SGLSWCVFIEKVGIKLDPDVYYIPAVPVRVEPVQTVLAVVIAVLVTYLASIYPALKASSV HHHHHHHHHHHCCCEECCCEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EPVEGLKAE CCCCCCCCC >Mature Secondary Structure MHSAERQTVHRWTFIWIGALVALVGFSLLGVALTSSQAWLETSSSLGLSLLGWGGLVQAL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEHCCHHHHHHHH NALLLVSEQPVATVPNTGLLVAGSVVWLAGWALIAAGIRRAPEPTEGPSPAAGATLYPRL HHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH ARYRDFYWSTLGAYGGGMLLAEVVLVLLQTVLSSGVSATELGSAGKGASGGLSLPPTGAF HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHH AIALLAGGMVAFISGFIGASRAQRLSLPEATIGVLYLGLPIPIILTLMERLPGLQLALGY HHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEEHHHH RLREVTYVAGLIGRPELGYWLVFTFLVLALVLGINTGFIAAGSGRVDLKLGFELFVARRH HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECHHHHHHHHH VAVFRPSLLLGTLAVLMLGIIPPLLIYFIIRSAEAAVERTRIRELGLKDPLAAASDLNRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH KLREQSPTMMMTALSVGGVGVGVMALIIVLSVMSGFEADLQQKILGTNAHAVVSKYAGDL HCCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHCCC PEYAKVMESVRKVPGVVGQTPFIINQVMIASEGNVDGVIIKGIDPGTVGEVTDLPKNILG HHHHHHHHHHHHCCCCCCCCCHHHHHEEEECCCCCCEEEEECCCCCCCCCHHHCCHHHCC GGSLDILYTPEKIVHRGLPDEEPAEESGVEEDDIIRRSGTPKKAPVLPGIVIGRELAASL CCCEEEEECCHHHHHCCCCCCCCCHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH RVVVGDRVNVVSPLGTELGPSGPIPKSRAFRVAAIFYSGMYEYDSKFVYILLNEAQDFFD HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH VKGATGIELKVADIDDARRIASQVVKVLGGYPYRARDWGEMNKNLFSALRLEKLVMGIIL CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SIIIIVAAGLIVATVIMLVLEKRKEISVLKALGVPDGGIVKIFLAEGLQIGVAGGFLGLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEHHHHHHHH SGLSWCVFIEKVGIKLDPDVYYIPAVPVRVEPVQTVLAVVIAVLVTYLASIYPALKASSV HHHHHHHHHHHCCCEECCCEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EPVEGLKAE CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]