| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is btuB [H]
Identifier: 108758073
GI number: 108758073
Start: 1996662
End: 1999271
Strand: Direct
Name: btuB [H]
Synonym: MXAN_1688
Alternate gene names: 108758073
Gene position: 1996662-1999271 (Clockwise)
Preceding gene: 108761305
Following gene: 108762757
Centisome position: 21.85
GC content: 69.31
Gene sequence:
>2610_bases ATGCCCACACTTCGTCGCTGGCGGGGTGCCCCCGCGCCATCCTCTCTGGTCCCCACGCTCGCACTCCTCTCCGTGCTGTC GATGGGCGTCGCGCGAGCCCAGGATGCGAGCGAGACCCCGGCGCCGGCGACGTCCGCATCACCCTCTGGCGCGACGCCGC ACCCGCAGGCGCCGGAGGGTGAGGGCGGGCCTGCGCCATCCGGTGGGGTCATCCCTCCGGTGCTGCTGGCCGAGCCAGAG GCTGTCTATCCGTCCGAGGCACTCGCCGCGGGGCTTGAAGGCGCGGTGAAGCTCCTCCTGACGCTTGATGCGGAGGGCCG GGTCACGCGCGCGGAGGTGGTCGAGGGACTTGGGCACGGACTCGATGAGGCGGCCGTGAGCGCGCTCGAGAACGCGCGCT TCTCCCCGGCGATGCAGGACGGCAACCCCGTCTCCTGCCAGTTCGAGTTCATCCACCACTTCGTCCTCGCCCGTCATCCC GAGGTAGCTCCGTCAGGCGCCGAGGATGTCGCCCAAGTCGCTCCCGACACGCCCGCGGAAGAGGCGACCGCGCAGCCTTC CGAGGAGCCAGAGCCTCCCGCTCCTCCTGGCTTCACCTCGGTCGTCCGCGCCAGGTCGACCGAAGCCCGCGCCCTGGTGC GCGGCTCGGAGGCCGTGGACGTCGTCGAATTGGAGAAGGCCCATGAGCGCGCCGAGGACCTCGCGGAGGTGCTGACGCGT GCCTCTGCCGTGCAGGTCCAGCGGACGGGCGGGATGGGGAGCCGGACCCAGCTCTCGCTCGGGGGGCTCTCTGGCGACCA GGTGCGAGTCCTCCTCGACGGCGTCCCCATCGAGTACTCGCCCTATGTCTACGGACTGGGAAGTGTTCCGGTCTCGCTCA TCCGGCAACTCGAGGTCTTCAACGGCGTCGTCCCGGTGCGCCTCGCGACGGACGCGCTGGGCGGTGCCATCCACCTGCGC TCCGACCTCGCGAAGCCCGAAACCGGCGCGTCCCTGTCGCTCCAGGGCGGGTCCTTCGGCAGCTACCGAGGGACTGGCAG GCTGACGTGGCGGGCCCATGAGCACGTCTTCGTGCGGGCAGCGGGATTCCACGACCGCGCGCAGAACGACTACGTCGTCA CTGTCCCCGTGGATGACCCGGCGACAGGGCGCGTCTCTCCGCGCGCCCTGCGCCGCAACCACGACGCCTATCGGGGCACC GGAGGCGATATCGAGGTGGGGTTCGAGGCACTACCGGGTATCGACCGGCTCGTGCTCAATGGCTACCTCGGTCGCTACGA CAAGGAGGTCCCGCACGATCAGTTCATGATCCAGCCCTATGGCGCGGTCACCTCCGCGCAGGAGAGTTGGGGCCTCGGGC TTCGCTACGAGGTGTCGCCCCATGAGCGGCTGAAGGTGCTCGCCATCGCCGGGTACAACCAGCGTGTGGGCGAGCTTCTC GACGCCTCCGACTGTCTATACGACTGGTACGGCGCCTGCCGTGCGACGCGGGCGAGGGCCGGGGAGACTGGCTCGACGCC GCTGGAGAACACCCAGACGCGCCAGACGTTGTTCGGCCGCGTGCGGCTCCTCGGGACGCTGCTCGACCCGGAGGACCTCG AGGTTTCGCTCGGCGTCGATGACAGTGACCGAAGCGGCGAGAACGCCTACCTCACCCGTCTGCAGCAGGAGGACCCTCTC CGGGTGCCGCTCGCGCTCACGTCCGCCTTCGGAGGTCTCTCCCATCGTCAGCTTCTCTGGGACGGCAGGTTCGAGAACAC CGTGTTCGTGAAGGGCTACTTGCAGCGCTTCGCCTCGGGAACGAGGCAGGAGGCCGCGGAGCGCCGGTGGGCCGGTGGTT TCGGTGACACCTTGCGCTTCAGTCTGACGCGGGGGCTGCTCCTCAAGGCGTCCTATGAGCGGACCACGCGGATGCCGCGG GTGGACGAGCTCTTTGGTGATGGGGGCCTGCTCGTGGAGAACTCGGCGCTCGTCCCCGAGTCGAGTCACAACGCCAACCT GGGCGTGGAGCTCCTCCCCATCGTCACGTCCGTTGGCCGTTTCGGCGCCAACGCGGTCGCGGGCGTCCGAGACGTCGAGA ACCTCATCCAGCTCTTCCCCGGCGACGCCACGCAGGCCTACGAGAACGTGGACCACGCCCGCTCCTTCTCGGCGCACGCA GGCGTGGACTGGGACTCACCCGGCGACTGGGTGGGGCTCACCGGCACCGTCACCTGGCTTGACTTCCGCAACCTCGCGCG GGAAGGCCAGTTCGCCCGCTTTCACGGGGACCGCATGCCCAACATTCCCTGGCTCCAGGCCTCGGCGACCGCGCGGTTCC AGAAGCGTCAGCTCTTGAGCGCCCAGGACGCTCTTGGCTTGGAGTGGACGACCCGCTTCGTCGAGTCGTTCTACCGCTCT TGGGAGAGCGCAGGGCGGGGTGGTGACAAGGCGCGGGTGCCCACCCAGGTGCTGCACTTCGCCGCGCTCACCTACCGCTC CCGGTTCGAGGGGCGCGCCTTCTCCTTCTCCTTCAACCTCCAGAATCTCACCGACGCTCCCGCCTTCGACATCGTCGGTG TCCAGAAGCCGGGCCGCGCGTTCTCCGCGCGCGCCACGGTTGAGCTCTGA
Upstream 100 bases:
>100_bases ACCCCCACCGCTGCCACTGATAGTACGTCGTGATGTTGAGAATGAGTATCAATATCGACACCGTCCTCGCGCCTTCGAGC CCTGCCTGTACACCGTGAAC
Downstream 100 bases:
>100_bases GCGCCCGCTGAGGCGCTTCGAGTCTCCTCGCAGGAACCCTTCGCTAAAAGGAAGCCCGATGAAGCTGAAAGCCTCACTCC TCACCCTCGCCGTGTTCGCC
Product: TonB family protein
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 869; Mature: 868
Protein sequence:
>869_residues MPTLRRWRGAPAPSSLVPTLALLSVLSMGVARAQDASETPAPATSASPSGATPHPQAPEGEGGPAPSGGVIPPVLLAEPE AVYPSEALAAGLEGAVKLLLTLDAEGRVTRAEVVEGLGHGLDEAAVSALENARFSPAMQDGNPVSCQFEFIHHFVLARHP EVAPSGAEDVAQVAPDTPAEEATAQPSEEPEPPAPPGFTSVVRARSTEARALVRGSEAVDVVELEKAHERAEDLAEVLTR ASAVQVQRTGGMGSRTQLSLGGLSGDQVRVLLDGVPIEYSPYVYGLGSVPVSLIRQLEVFNGVVPVRLATDALGGAIHLR SDLAKPETGASLSLQGGSFGSYRGTGRLTWRAHEHVFVRAAGFHDRAQNDYVVTVPVDDPATGRVSPRALRRNHDAYRGT GGDIEVGFEALPGIDRLVLNGYLGRYDKEVPHDQFMIQPYGAVTSAQESWGLGLRYEVSPHERLKVLAIAGYNQRVGELL DASDCLYDWYGACRATRARAGETGSTPLENTQTRQTLFGRVRLLGTLLDPEDLEVSLGVDDSDRSGENAYLTRLQQEDPL RVPLALTSAFGGLSHRQLLWDGRFENTVFVKGYLQRFASGTRQEAAERRWAGGFGDTLRFSLTRGLLLKASYERTTRMPR VDELFGDGGLLVENSALVPESSHNANLGVELLPIVTSVGRFGANAVAGVRDVENLIQLFPGDATQAYENVDHARSFSAHA GVDWDSPGDWVGLTGTVTWLDFRNLAREGQFARFHGDRMPNIPWLQASATARFQKRQLLSAQDALGLEWTTRFVESFYRS WESAGRGGDKARVPTQVLHFAALTYRSRFEGRAFSFSFNLQNLTDAPAFDIVGVQKPGRAFSARATVEL
Sequences:
>Translated_869_residues MPTLRRWRGAPAPSSLVPTLALLSVLSMGVARAQDASETPAPATSASPSGATPHPQAPEGEGGPAPSGGVIPPVLLAEPE AVYPSEALAAGLEGAVKLLLTLDAEGRVTRAEVVEGLGHGLDEAAVSALENARFSPAMQDGNPVSCQFEFIHHFVLARHP EVAPSGAEDVAQVAPDTPAEEATAQPSEEPEPPAPPGFTSVVRARSTEARALVRGSEAVDVVELEKAHERAEDLAEVLTR ASAVQVQRTGGMGSRTQLSLGGLSGDQVRVLLDGVPIEYSPYVYGLGSVPVSLIRQLEVFNGVVPVRLATDALGGAIHLR SDLAKPETGASLSLQGGSFGSYRGTGRLTWRAHEHVFVRAAGFHDRAQNDYVVTVPVDDPATGRVSPRALRRNHDAYRGT GGDIEVGFEALPGIDRLVLNGYLGRYDKEVPHDQFMIQPYGAVTSAQESWGLGLRYEVSPHERLKVLAIAGYNQRVGELL DASDCLYDWYGACRATRARAGETGSTPLENTQTRQTLFGRVRLLGTLLDPEDLEVSLGVDDSDRSGENAYLTRLQQEDPL RVPLALTSAFGGLSHRQLLWDGRFENTVFVKGYLQRFASGTRQEAAERRWAGGFGDTLRFSLTRGLLLKASYERTTRMPR VDELFGDGGLLVENSALVPESSHNANLGVELLPIVTSVGRFGANAVAGVRDVENLIQLFPGDATQAYENVDHARSFSAHA GVDWDSPGDWVGLTGTVTWLDFRNLAREGQFARFHGDRMPNIPWLQASATARFQKRQLLSAQDALGLEWTTRFVESFYRS WESAGRGGDKARVPTQVLHFAALTYRSRFEGRAFSFSFNLQNLTDAPAFDIVGVQKPGRAFSARATVEL >Mature_868_residues PTLRRWRGAPAPSSLVPTLALLSVLSMGVARAQDASETPAPATSASPSGATPHPQAPEGEGGPAPSGGVIPPVLLAEPEA VYPSEALAAGLEGAVKLLLTLDAEGRVTRAEVVEGLGHGLDEAAVSALENARFSPAMQDGNPVSCQFEFIHHFVLARHPE VAPSGAEDVAQVAPDTPAEEATAQPSEEPEPPAPPGFTSVVRARSTEARALVRGSEAVDVVELEKAHERAEDLAEVLTRA SAVQVQRTGGMGSRTQLSLGGLSGDQVRVLLDGVPIEYSPYVYGLGSVPVSLIRQLEVFNGVVPVRLATDALGGAIHLRS DLAKPETGASLSLQGGSFGSYRGTGRLTWRAHEHVFVRAAGFHDRAQNDYVVTVPVDDPATGRVSPRALRRNHDAYRGTG GDIEVGFEALPGIDRLVLNGYLGRYDKEVPHDQFMIQPYGAVTSAQESWGLGLRYEVSPHERLKVLAIAGYNQRVGELLD ASDCLYDWYGACRATRARAGETGSTPLENTQTRQTLFGRVRLLGTLLDPEDLEVSLGVDDSDRSGENAYLTRLQQEDPLR VPLALTSAFGGLSHRQLLWDGRFENTVFVKGYLQRFASGTRQEAAERRWAGGFGDTLRFSLTRGLLLKASYERTTRMPRV DELFGDGGLLVENSALVPESSHNANLGVELLPIVTSVGRFGANAVAGVRDVENLIQLFPGDATQAYENVDHARSFSAHAG VDWDSPGDWVGLTGTVTWLDFRNLAREGQFARFHGDRMPNIPWLQASATARFQKRQLLSAQDALGLEWTTRFVESFYRSW ESAGRGGDKARVPTQVLHFAALTYRSRFEGRAFSFSFNLQNLTDAPAFDIVGVQKPGRAFSARATVEL
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG4206
COG function: function code H; Outer membrane cobalamin receptor protein
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 93690; Mature: 93559
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTLRRWRGAPAPSSLVPTLALLSVLSMGVARAQDASETPAPATSASPSGATPHPQAPEG CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC EGGPAPSGGVIPPVLLAEPEAVYPSEALAAGLEGAVKLLLTLDAEGRVTRAEVVEGLGHG CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHCCC LDEAAVSALENARFSPAMQDGNPVSCQFEFIHHFVLARHPEVAPSGAEDVAQVAPDTPAE HHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCH EATAQPSEEPEPPAPPGFTSVVRARSTEARALVRGSEAVDVVELEKAHERAEDLAEVLTR HCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH ASAVQVQRTGGMGSRTQLSLGGLSGDQVRVLLDGVPIEYSPYVYGLGSVPVSLIRQLEVF HHHEEEEECCCCCCCCEEEECCCCCCEEEEEEECCCCEECCEEEECCCHHHHHHHHHHHH NGVVPVRLATDALGGAIHLRSDLAKPETGASLSLQGGSFGSYRGTGRLTWRAHEHVFVRA CCEEEEEEEHHHHCCEEEEHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCEEEEEE AGFHDRAQNDYVVTVPVDDPATGRVSPRALRRNHDAYRGTGGDIEVGFEALPGIDRLVLN CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCHHCCCCCCEEECHHHCCCHHHHHHH GYLGRYDKEVPHDQFMIQPYGAVTSAQESWGLGLRYEVSPHERLKVLAIAGYNQRVGELL HHHHCCCCCCCCCCEEEECCCCCCCCHHHCCCCEEEECCHHHCEEEEEEECCCHHHHHHH DASDCLYDWYGACRATRARAGETGSTPLENTQTRQTLFGRVRLLGTLLDPEDLEVSLGVD HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCC DSDRSGENAYLTRLQQEDPLRVPLALTSAFGGLSHRQLLWDGRFENTVFVKGYLQRFASG CCCCCCCCHHHHHHCCCCCCEEHHHHHHHHCCCCCCEEEECCCCCCEEEHHHHHHHHHCC TRQEAAERRWAGGFGDTLRFSLTRGLLLKASYERTTRMPRVDELFGDGGLLVENSALVPE HHHHHHHHHHCCCCCCHHHHHHHHCEEEEECHHHHHCCCCHHHHHCCCCEEEECCCCCCC SSHNANLGVELLPIVTSVGRFGANAVAGVRDVENLIQLFPGDATQAYENVDHARSFSAHA CCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC GVDWDSPGDWVGLTGTVTWLDFRNLAREGQFARFHGDRMPNIPWLQASATARFQKRQLLS CCCCCCCCCEEECCEEEEEHHHHHHHHCCCEEEECCCCCCCCCEEECHHHHHHHHHHHHH AQDALGLEWTTRFVESFYRSWESAGRGGDKARVPTQVLHFAALTYRSRFEGRAFSFSFNL HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC QNLTDAPAFDIVGVQKPGRAFSARATVEL CCCCCCCCEEEEECCCCCCCCCCCEEEEC >Mature Secondary Structure PTLRRWRGAPAPSSLVPTLALLSVLSMGVARAQDASETPAPATSASPSGATPHPQAPEG CCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC EGGPAPSGGVIPPVLLAEPEAVYPSEALAAGLEGAVKLLLTLDAEGRVTRAEVVEGLGHG CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHCCC LDEAAVSALENARFSPAMQDGNPVSCQFEFIHHFVLARHPEVAPSGAEDVAQVAPDTPAE HHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCH EATAQPSEEPEPPAPPGFTSVVRARSTEARALVRGSEAVDVVELEKAHERAEDLAEVLTR HCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH ASAVQVQRTGGMGSRTQLSLGGLSGDQVRVLLDGVPIEYSPYVYGLGSVPVSLIRQLEVF HHHEEEEECCCCCCCCEEEECCCCCCEEEEEEECCCCEECCEEEECCCHHHHHHHHHHHH NGVVPVRLATDALGGAIHLRSDLAKPETGASLSLQGGSFGSYRGTGRLTWRAHEHVFVRA CCEEEEEEEHHHHCCEEEEHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCEEEEEE AGFHDRAQNDYVVTVPVDDPATGRVSPRALRRNHDAYRGTGGDIEVGFEALPGIDRLVLN CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCHHCCCCCCEEECHHHCCCHHHHHHH GYLGRYDKEVPHDQFMIQPYGAVTSAQESWGLGLRYEVSPHERLKVLAIAGYNQRVGELL HHHHCCCCCCCCCCEEEECCCCCCCCHHHCCCCEEEECCHHHCEEEEEEECCCHHHHHHH DASDCLYDWYGACRATRARAGETGSTPLENTQTRQTLFGRVRLLGTLLDPEDLEVSLGVD HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCC DSDRSGENAYLTRLQQEDPLRVPLALTSAFGGLSHRQLLWDGRFENTVFVKGYLQRFASG CCCCCCCCHHHHHHCCCCCCEEHHHHHHHHCCCCCCEEEECCCCCCEEEHHHHHHHHHCC TRQEAAERRWAGGFGDTLRFSLTRGLLLKASYERTTRMPRVDELFGDGGLLVENSALVPE HHHHHHHHHHCCCCCCHHHHHHHHCEEEEECHHHHHCCCCHHHHHCCCCEEEECCCCCCC SSHNANLGVELLPIVTSVGRFGANAVAGVRDVENLIQLFPGDATQAYENVDHARSFSAHA CCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC GVDWDSPGDWVGLTGTVTWLDFRNLAREGQFARFHGDRMPNIPWLQASATARFQKRQLLS CCCCCCCCCEEECCEEEEEHHHHHHHHCCCEEEECCCCCCCCCEEECHHHHHHHHHHHHH AQDALGLEWTTRFVESFYRSWESAGRGGDKARVPTQVLHFAALTYRSRFEGRAFSFSFNL HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC QNLTDAPAFDIVGVQKPGRAFSARATVEL CCCCCCCCEEEEECCCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA