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The map label for this gene is yciO [C]

Identifier: 108757718

GI number: 108757718

Start: 4625243

End: 4625854

Strand: Reverse

Name: yciO [C]

Synonym: MXAN_3846

Alternate gene names: 108757718

Gene position: 4625854-4625243 (Counterclockwise)

Preceding gene: 108761527

Following gene: 108760986

Centisome position: 50.61

GC content: 64.38

Gene sequence:

>612_bases
ATGGCCGCACCCATCCTCGAGGTGGACACGGAGCACCCATCACCCCGCCACATCCAGCGAGCGGTGGAGGTGCTGGAGCG
CGGCGGCCTGCTGGCCTACCCGACGGACACGTACTTCGGGCTCGGCTGCGACTTGAGCTCCAAGAAGGGCATCGAGCGGC
TGTACCAGCTCAAGGGACGCGACAAGAAGAAGCCCCTGTCCTTTCTCTGCCCCGACCTGTCGGACGTGGCGCGCTACGCG
CACGTGAGCAACTTCGCGTACCGGACCATGAAGAGCCTCACTCCGGGTGCGTTCACCTTCATCCTGGAAGCGACGCGTCT
GGTGCCGGACCTGATGATGTCCAAGCAGAAGCAGGTGGGCATCCGGGTGCCGGACTCCGCGCTCGTTCGCGAGCTGACCC
GAGCCCTGGGCCGCCCTCTGGTGACGACCTCCGCGACCAATACGGAGGGTGAGCCCCTCACGGACGCAAAGGATATCAAG
GCCGATCTGGGACACGGCCTGGACCTCATCCTTGACGGGGGCGTGACGCTCAATGAACCGTCGACCGTGATTTCACTCAT
CGGCGATTCACTTGAAATCCTCCGGCAGGGGAAGGGTAGGCTGGAGGACTAG

Upstream 100 bases:

>100_bases
CGGCCTCCGGGGAGATCCGCGCGGACGACGCGCAGGGAACGGCATAGGCTGTCAGGCATCCACACCTTCAGCAGCAGTCA
CAGGAGGCACGGAGGACATC

Downstream 100 bases:

>100_bases
AACCCGAGAATAGGGGGATTTCTTGGCACAGGGGGGAACACGGCCGAGCTCCGTGGATGCACCGGAGCAGGTCCCAGGGC
TGCTCAAGTTATTGCTGTTG

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAAPILEVDTEHPSPRHIQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGRDKKKPLSFLCPDLSDVARYA
HVSNFAYRTMKSLTPGAFTFILEATRLVPDLMMSKQKQVGIRVPDSALVRELTRALGRPLVTTSATNTEGEPLTDAKDIK
ADLGHGLDLILDGGVTLNEPSTVISLIGDSLEILRQGKGRLED

Sequences:

>Translated_203_residues
MAAPILEVDTEHPSPRHIQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGRDKKKPLSFLCPDLSDVARYA
HVSNFAYRTMKSLTPGAFTFILEATRLVPDLMMSKQKQVGIRVPDSALVRELTRALGRPLVTTSATNTEGEPLTDAKDIK
ADLGHGLDLILDGGVTLNEPSTVISLIGDSLEILRQGKGRLED
>Mature_202_residues
AAPILEVDTEHPSPRHIQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGRDKKKPLSFLCPDLSDVARYAH
VSNFAYRTMKSLTPGAFTFILEATRLVPDLMMSKQKQVGIRVPDSALVRELTRALGRPLVTTSATNTEGEPLTDAKDIKA
DLGHGLDLILDGGVTLNEPSTVISLIGDSLEILRQGKGRLED

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=157, Percent_Identity=33.1210191082803, Blast_Score=75, Evalue=5e-14,
Organism=Escherichia coli, GI87081864, Length=198, Percent_Identity=36.8686868686869, Blast_Score=140, Evalue=5e-35,
Organism=Escherichia coli, GI2367210, Length=184, Percent_Identity=30.4347826086957, Blast_Score=85, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17537239, Length=192, Percent_Identity=34.8958333333333, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI78707274, Length=188, Percent_Identity=29.7872340425532, Blast_Score=87, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22215; Mature: 22084

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPILEVDTEHPSPRHIQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGR
CCCCCEECCCCCCCHHHHHHHHHHHHHCCEEEECCCCCEECCCCCCHHHHHHHHHHHCCC
DKKKPLSFLCPDLSDVARYAHVSNFAYRTMKSLTPGAFTFILEATRLVPDLMMSKQKQVG
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
IRVPDSALVRELTRALGRPLVTTSATNTEGEPLTDAKDIKADLGHGLDLILDGGVTLNEP
CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEECCEEECCH
STVISLIGDSLEILRQGKGRLED
HHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AAPILEVDTEHPSPRHIQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGR
CCCCEECCCCCCCHHHHHHHHHHHHHCCEEEECCCCCEECCCCCCHHHHHHHHHHHCCC
DKKKPLSFLCPDLSDVARYAHVSNFAYRTMKSLTPGAFTFILEATRLVPDLMMSKQKQVG
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
IRVPDSALVRELTRALGRPLVTTSATNTEGEPLTDAKDIKADLGHGLDLILDGGVTLNEP
CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEECCEEECCH
STVISLIGDSLEILRQGKGRLED
HHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]