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The map label for this gene is rsmE [H]

Identifier: 108757437

GI number: 108757437

Start: 2357420

End: 2358184

Strand: Reverse

Name: rsmE [H]

Synonym: MXAN_2027

Alternate gene names: 108757437

Gene position: 2358184-2357420 (Counterclockwise)

Preceding gene: 108760044

Following gene: 108763789

Centisome position: 25.8

GC content: 71.11

Gene sequence:

>765_bases
GTGAACCTGCTGCTCCTCCTGGACGAAGACTTCCTGCCCGACGGCACCGCGCGCCTCACCGGACGGCGGGCCCAGCACGC
CCGCGAGGTGCTGCGCGCCGAGCCCGGCGAGTCCCTCCGCGTAGGACACCTGGGAGGCCTCACCGGCACCGGCGAGGTGC
TGGAGAACAGCGCCGGCGTGCTGCACCTGCGCGTCACCCTCACCGAGCCTCCGCCCCCGCGCGCGGGCATCGACCTGCTG
CTGGCCATCCCCCGCCCCAAGGCGCTGAAGAAGGTGCTGCCCGCGGTGGCCTCGCTGGGCGTGGACCGCATCGTCCTGCT
CAACGCGGCGCGCGTGGAGAAGAGCTACTTCGATTCCAAGGTGCTGGACCCCGCCTTTGTCCACGAGCTGCTCATCCAGG
GACTGGAGCAGGCCCGGGACACGCGCCTCCCAGAGGTGCTGGTCCGAGAGCGCTTCCGTCCCTTCGTCGAAGACGAGCTC
GACGCCTTCTTCGGCCCCCAGACGCTCCGCCTGCTCCCCCACCCGCCCGCGAGGCAGTCGCTCCGAGCGCTGGGCGTGGG
TCTGGCCCAGCGCGTCGTACTGGCCATTGGACCGGACGGCGGCTGGGTGCCCTTCGAGGCCGACCTCCTGGAAGCCCATG
GTTTCCACCCGTTTTCGTTGGGGCCCCGCATTCTTCGCGTGGAGACGGCCGTGCCCGCCCTCCTGGGGCAGGTGGCGCTT
CTTCGGGAGGACATTGCGGCACCGCCCGCGACAACTCTGACTTGA

Upstream 100 bases:

>100_bases
GGTGCCCGGGGGCCGGCTTCCCCGGGGCAACAGCGGCCGGGCACCGCCCCCCTGGACCGAAGATTCCCCAAGCCTCCAGG
CGACGGAGTACAGAGGCCCG

Downstream 100 bases:

>100_bases
AGGCGCGCCGTGGTCGGGTGAAGAGTTGTCCATGGCCACGACCCGTTCTTCCGCCGCCGCTCAGCCCGCCCTGGGCGAGC
AACAGCCGATTGTCACCTCC

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNLLLLLDEDFLPDGTARLTGRRAQHAREVLRAEPGESLRVGHLGGLTGTGEVLENSAGVLHLRVTLTEPPPPRAGIDLL
LAIPRPKALKKVLPAVASLGVDRIVLLNAARVEKSYFDSKVLDPAFVHELLIQGLEQARDTRLPEVLVRERFRPFVEDEL
DAFFGPQTLRLLPHPPARQSLRALGVGLAQRVVLAIGPDGGWVPFEADLLEAHGFHPFSLGPRILRVETAVPALLGQVAL
LREDIAAPPATTLT

Sequences:

>Translated_254_residues
MNLLLLLDEDFLPDGTARLTGRRAQHAREVLRAEPGESLRVGHLGGLTGTGEVLENSAGVLHLRVTLTEPPPPRAGIDLL
LAIPRPKALKKVLPAVASLGVDRIVLLNAARVEKSYFDSKVLDPAFVHELLIQGLEQARDTRLPEVLVRERFRPFVEDEL
DAFFGPQTLRLLPHPPARQSLRALGVGLAQRVVLAIGPDGGWVPFEADLLEAHGFHPFSLGPRILRVETAVPALLGQVAL
LREDIAAPPATTLT
>Mature_254_residues
MNLLLLLDEDFLPDGTARLTGRRAQHAREVLRAEPGESLRVGHLGGLTGTGEVLENSAGVLHLRVTLTEPPPPRAGIDLL
LAIPRPKALKKVLPAVASLGVDRIVLLNAARVEKSYFDSKVLDPAFVHELLIQGLEQARDTRLPEVLVRERFRPFVEDEL
DAFFGPQTLRLLPHPPARQSLRALGVGLAQRVVLAIGPDGGWVPFEADLLEAHGFHPFSLGPRILRVETAVPALLGQVAL
LREDIAAPPATTLT

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 27575; Mature: 27575

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLLLLDEDFLPDGTARLTGRRAQHAREVLRAEPGESLRVGHLGGLTGTGEVLENSAGV
CCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHCCCCE
LHLRVTLTEPPPPRAGIDLLLAIPRPKALKKVLPAVASLGVDRIVLLNAARVEKSYFDSK
EEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHH
VLDPAFVHELLIQGLEQARDTRLPEVLVRERFRPFVEDELDAFFGPQTLRLLPHPPARQS
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCCCHHHH
LRALGVGLAQRVVLAIGPDGGWVPFEADLLEAHGFHPFSLGPRILRVETAVPALLGQVAL
HHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHH
LREDIAAPPATTLT
HHHHHCCCCCCCCC
>Mature Secondary Structure
MNLLLLLDEDFLPDGTARLTGRRAQHAREVLRAEPGESLRVGHLGGLTGTGEVLENSAGV
CCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHCCCCE
LHLRVTLTEPPPPRAGIDLLLAIPRPKALKKVLPAVASLGVDRIVLLNAARVEKSYFDSK
EEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHH
VLDPAFVHELLIQGLEQARDTRLPEVLVRERFRPFVEDELDAFFGPQTLRLLPHPPARQS
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCCCHHHH
LRALGVGLAQRVVLAIGPDGGWVPFEADLLEAHGFHPFSLGPRILRVETAVPALLGQVAL
HHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHH
LREDIAAPPATTLT
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]