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The map label for this gene is yocS [H]

Identifier: 108757435

GI number: 108757435

Start: 4602439

End: 4603362

Strand: Direct

Name: yocS [H]

Synonym: MXAN_3829

Alternate gene names: 108757435

Gene position: 4602439-4603362 (Clockwise)

Preceding gene: 108762876

Following gene: 108763416

Centisome position: 50.36

GC content: 66.02

Gene sequence:

>924_bases
ATGCAGTCGAATGTATTCACGGCGGTACTCATGCCGCTGGCGCTGGCCGTCATCATGCTCGGGCTTGGCCTGACGCTGAC
GCTGGCGGACTTCAAGCGGGTCATTGTCTATCCGCGCGCCATCCTGGTGGGCCTCGGCAGCCAGATGTTGGTGTTGCCGG
TGGCGTGCCTGCTCATCGCCCACGCTTTCCGTCTACCGCCGGAGCTGGCGGTGGGGCTGATGCTGCTGGCGGCCTCCCCT
GGCGGCGCGACGGCGAACCTCTTCAGCCACCTGGCCCGCGGTGACGTGGCGCTCAACATCACGCTGACGGCGGTGAACAG
CGCGCTGTCGCTCGTCACGCTGCCGCTCATCATCAACCTGTCGCTGGCGCACTTCATGGACGAGGGCCGCGCGGTTCCCA
TGCAGTTCGCGAAGATCGTGCAGGTGGTGCTCATCGTGCTGGGGCCGGTGAGCCTGGGCATGTTCATCCGCTCGCGCAGC
GCGGCCGTCGCGCAGCGCATGGACAAGCCCATTCGCATCCTGTCCACCCTCTTCCTCGTCGCGGTGATTGCAGCGTCCGT
GTACACGGAGCGCGCGAATGCGCTCAGCTTCTTCCGCCAGGTGGGCCCGGCGGCGCTGGCCTTCAACCTGGTGAGCCTCG
GGGTGGGCTACTTCGTGCCCATCCTGCTGCGCCTGCCCCGGCGGCAAGCGGTTGCCATTGGCATGGAGATTGGCATTCAC
AACGGAATGCTTGCGATTGCCATCGCGCTCAGCCCGACGCTGCTGGCGAACTCGACCATGGCCATTCCCCCGGCCATCTA
CAGCCTCATCATGTACTTCACCGCGGCGGCCTTCGGCTTCTATGTCAGCCGGCGCTACGCGGATGAGCAGGACCCCGCTG
TACACCGCACCCCCACGTCACTCCCCGAGAAGGTGTCTCGATGA

Upstream 100 bases:

>100_bases
CCTCCACTTTTAGCAACCTTTGAGAGCGGAGACGCTTGAAGCGCCCCGCCCTCTTGCGCGACGCTAATGCTCAACGCTGG
ACACTCCATCCGGGGGGCGA

Downstream 100 bases:

>100_bases
CGCTGCGTCGACCGCTGTCTGTGCTTTCCCTGTCACTTTGCCTGGGATTCTCCGCACCAGCCGCCGCCGAAGAGCCCGAA
GCCGCTGCCCTGCCGTCGAC

Product: sodium/bile acid symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MQSNVFTAVLMPLALAVIMLGLGLTLTLADFKRVIVYPRAILVGLGSQMLVLPVACLLIAHAFRLPPELAVGLMLLAASP
GGATANLFSHLARGDVALNITLTAVNSALSLVTLPLIINLSLAHFMDEGRAVPMQFAKIVQVVLIVLGPVSLGMFIRSRS
AAVAQRMDKPIRILSTLFLVAVIAASVYTERANALSFFRQVGPAALAFNLVSLGVGYFVPILLRLPRRQAVAIGMEIGIH
NGMLAIAIALSPTLLANSTMAIPPAIYSLIMYFTAAAFGFYVSRRYADEQDPAVHRTPTSLPEKVSR

Sequences:

>Translated_307_residues
MQSNVFTAVLMPLALAVIMLGLGLTLTLADFKRVIVYPRAILVGLGSQMLVLPVACLLIAHAFRLPPELAVGLMLLAASP
GGATANLFSHLARGDVALNITLTAVNSALSLVTLPLIINLSLAHFMDEGRAVPMQFAKIVQVVLIVLGPVSLGMFIRSRS
AAVAQRMDKPIRILSTLFLVAVIAASVYTERANALSFFRQVGPAALAFNLVSLGVGYFVPILLRLPRRQAVAIGMEIGIH
NGMLAIAIALSPTLLANSTMAIPPAIYSLIMYFTAAAFGFYVSRRYADEQDPAVHRTPTSLPEKVSR
>Mature_307_residues
MQSNVFTAVLMPLALAVIMLGLGLTLTLADFKRVIVYPRAILVGLGSQMLVLPVACLLIAHAFRLPPELAVGLMLLAASP
GGATANLFSHLARGDVALNITLTAVNSALSLVTLPLIINLSLAHFMDEGRAVPMQFAKIVQVVLIVLGPVSLGMFIRSRS
AAVAQRMDKPIRILSTLFLVAVIAASVYTERANALSFFRQVGPAALAFNLVSLGVGYFVPILLRLPRRQAVAIGMEIGIH
NGMLAIAIALSPTLLANSTMAIPPAIYSLIMYFTAAAFGFYVSRRYADEQDPAVHRTPTSLPEKVSR

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=304, Percent_Identity=25.3289473684211, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI215422368, Length=228, Percent_Identity=30.7017543859649, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI215422370, Length=228, Percent_Identity=30.7017543859649, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI9790143, Length=228, Percent_Identity=30.7017543859649, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI4506971, Length=270, Percent_Identity=24.0740740740741, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI37537552, Length=156, Percent_Identity=28.8461538461538, Blast_Score=72, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 32756; Mature: 32756

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSNVFTAVLMPLALAVIMLGLGLTLTLADFKRVIVYPRAILVGLGSQMLVLPVACLLIA
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
HAFRLPPELAVGLMLLAASPGGATANLFSHLARGDVALNITLTAVNSALSLVTLPLIINL
HHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHH
SLAHFMDEGRAVPMQFAKIVQVVLIVLGPVSLGMFIRSRSAAVAQRMDKPIRILSTLFLV
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AVIAASVYTERANALSFFRQVGPAALAFNLVSLGVGYFVPILLRLPRRQAVAIGMEIGIH
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
NGMLAIAIALSPTLLANSTMAIPPAIYSLIMYFTAAAFGFYVSRRYADEQDPAVHRTPTS
CCHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
LPEKVSR
CHHHHCC
>Mature Secondary Structure
MQSNVFTAVLMPLALAVIMLGLGLTLTLADFKRVIVYPRAILVGLGSQMLVLPVACLLIA
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
HAFRLPPELAVGLMLLAASPGGATANLFSHLARGDVALNITLTAVNSALSLVTLPLIINL
HHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHH
SLAHFMDEGRAVPMQFAKIVQVVLIVLGPVSLGMFIRSRSAAVAQRMDKPIRILSTLFLV
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AVIAASVYTERANALSFFRQVGPAALAFNLVSLGVGYFVPILLRLPRRQAVAIGMEIGIH
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
NGMLAIAIALSPTLLANSTMAIPPAIYSLIMYFTAAAFGFYVSRRYADEQDPAVHRTPTS
CCHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
LPEKVSR
CHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]